| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1334 |
|---|
| Symbol | |
|---|
| ID | 6183551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1152311 |
|---|
| End bp | 1153288 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671891 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001798064 |
|---|
| Protein GI | 171463951 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.000000000781341 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATCA TCCAACAGCT TTTAGTCCGA CTCATCTCTC TGGTCGCAAT CTTCTCGGCA
GAAGCTTTTG CTCAGAGCAA TTACCCCAAT AAACCGATTA ACTTTATCGT GCCCTATGGC
GCCGGTGGAA GTGCGGATTC AAGAAGCCGC CAGATTGCGC AAAAGATGAG CGTCATCCTA
AAGCAGCCGA TTATGATTGA TAACAAACCA GGTGCCGGAG GAAATATTGG TACAGAAGCA
ATCGTTCGTG CTGCTCCTGA CGGATACACC ATCGGCATGG GTAACTTTGC CCCAATGGCA
GTCAACAAGA CACTCTTTGG CAATCTACGC TATGACCCCG AGACGGATTT AACACCCATC
ATCCTGATTG AAAAAGGCCC CTTAGTGTTG GTGGTCAATC CCAATTCCCC ATTTAAAACA
GTTCAAGATA TTGTTCTCGC GGCAAAAGCA AAACCAGGCG TTCTTACATT TTCTTCAGGT
GGCATTGGTG GCAGCCATCA ACTCTCTGCA GAACTCTTTG AACTCAATGC TGGCATTCAG
ATGATTCATG TGCCGTATAA GAGTGGATCA GCTGCTTTAA CCGATCTGAT GGCGGGTAAC
GTTAATCTCA TGTTTGACCA AATGTATTCA GCGGTGCCTA GCATCAAAAC AGACAAGATT
CGACCACTCG CCATCACCAG CAAAAAGCGC TCACCATTAC TCCCTAACGT TCCAAGCTTT
GCTGAACTTG GCTACCCAAA AGTAGAAGTC CTAAATTGGC AAGGTCTTAT TGCACCCAAA
GGAACGCCCA AGGCCATTAT TGATAAGCTG AATGCCGCTG CAAATGAAGC CCTTAAAGAT
CCTCAGTTAC GCGAACTAAT GCTGTCACAA GGCAATGAGA TTGGCGGGGG GAGTCCCGCT
GAATTTGCCG CCCTTGTCAA AGCAGAAGCA AGCAAATGGA GTGCACTGGT TAAAACTGCG
AATATCAAGC CAGAATAA
|
|---|
| Protein sequence | MRIIQQLLVR LISLVAIFSA EAFAQSNYPN KPINFIVPYG AGGSADSRSR QIAQKMSVIL
KQPIMIDNKP GAGGNIGTEA IVRAAPDGYT IGMGNFAPMA VNKTLFGNLR YDPETDLTPI
ILIEKGPLVL VVNPNSPFKT VQDIVLAAKA KPGVLTFSSG GIGGSHQLSA ELFELNAGIQ
MIHVPYKSGS AALTDLMAGN VNLMFDQMYS AVPSIKTDKI RPLAITSKKR SPLLPNVPSF
AELGYPKVEV LNWQGLIAPK GTPKAIIDKL NAAANEALKD PQLRELMLSQ GNEIGGGSPA
EFAALVKAEA SKWSALVKTA NIKPE
|
|---|
| |