| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1312 |
|---|
| Symbol | |
|---|
| ID | 6183478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1134891 |
|---|
| End bp | 1136015 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671873 |
|---|
| Product | histidinol-phosphate aminotransferase |
|---|
| Protein accession | YP_001798046 |
|---|
| Protein GI | 171463933 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0079] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase |
|---|
| TIGRFAM ID | [TIGR01141] histidinol-phosphate aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00000000000000790606 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACATCCA AGATTGGCTT AAAACATATT CATGAGATTG CCCCTTACGT TGGCGGGCGA
CCAATTGGTG AAGTTGCTCG TGAGTATGGT TTGGATGAAA GCAAGATTGT GAAATTGGCT
TCCAATGAAA ATCCATTGGG TATGCCTAAG TCTGCACAAG ATGCCATGCT CAAGGCGGCA
AGCGATCTTG GTCGATATCC GGATTCCAAT GGCTTTGAGC TCAAGAATGT GCTTGCGACG
CGCTTAGGCG TGCCAACCGA TTGGATTACT TTAGGCAATG GCAGTAATGA CATTCTAGAG
CTCGCTGCAC GCGCTGTGGC GCAGGCAGGC GACGAGGTAA TTTTTTCTAA ACACGCTTTT
GCTGTCTACC CTCTGGCAAC TCAGGCTGTT GGGGCAAAAG CAGTTGAAGT GGCTGCTACT
GAAATCTATG GACATGATTT GCCAGCCATG TTGGCGGCAA TTAAGTCGTC TGGTGATAAG
GCCAAGCTTG TATTTGTGGC TAATCCTAAC AATCCAACAG GGAGTTATTT GACTGCTAAA
GAGATTGAAG ACTTTTTGGT GGGGGTACCT TCCAATGTTG TAGTAGTTCT AGATGAAGCT
TATAACGAGT ACCTCACTTC AGAGCAGCGC TACGATGCGA TTGCTTGGGT AAAGCGTTTT
CCGAATATGA TTTTGTCGCG CAGCTTCTCA AAAGCCTATG GCTTGGCTGG ATTGCGGATT
GGTTATGGAG TTGCGCAACC TCATTTGACA GATTTGCTCA ATCGCATTCG TCAACCATTC
AATGTGAATA GTCTTGCGCA AGCTGCGGCG ATCGCTGCGT TTCAGGATCA AGTCTTTCTG
CAGCAGGGTT TTGAGTTAAA CCGCGCTGGG TATGCTCAAT TAACTTCGGC ATTTGATGGA
TTGGGTCTGA AATATTTACC ATCAGCTGGC AACTTTGTTC TGGTCAAAGT GGGTGATGAC
GATCAGGCGG GTGCTCGTAT TAACTTGGCC TTGCTCAAGC GCGGCATCAT TGTTCGTCCT
GTGGGTAACT ACGGTTTACC GCAGTGGCTA CGTATCTCTA TTGGTTTGTC TGAAGAAAAT
GCCGCCTTCA TCGATGCCTT AAAAGCAATC TTGGCTCAAG AATAA
|
|---|
| Protein sequence | MTSKIGLKHI HEIAPYVGGR PIGEVAREYG LDESKIVKLA SNENPLGMPK SAQDAMLKAA
SDLGRYPDSN GFELKNVLAT RLGVPTDWIT LGNGSNDILE LAARAVAQAG DEVIFSKHAF
AVYPLATQAV GAKAVEVAAT EIYGHDLPAM LAAIKSSGDK AKLVFVANPN NPTGSYLTAK
EIEDFLVGVP SNVVVVLDEA YNEYLTSEQR YDAIAWVKRF PNMILSRSFS KAYGLAGLRI
GYGVAQPHLT DLLNRIRQPF NVNSLAQAAA IAAFQDQVFL QQGFELNRAG YAQLTSAFDG
LGLKYLPSAG NFVLVKVGDD DQAGARINLA LLKRGIIVRP VGNYGLPQWL RISIGLSEEN
AAFIDALKAI LAQE
|
|---|
| |