| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1308 |
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| Symbol | rpsA |
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| ID | 6183899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1130178 |
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| End bp | 1131851 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671869 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001798042 |
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| Protein GI | 171463929 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.302956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0000000365743 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGAAT CATTTGCAGA ACTATTTGAA GAATCATTAA CCCGATCGAA TATGAAGACC
GGCCAAGTTA TTTCGGCTGA AGTTCTTCGC ATCGACCATA ACTTCGTCGT TGTTAACGCT
GGCTTAAAGT CTGAAGCGTT TATTCCTGTT GAAGAATTCC ATAACGACGC TGGCGAGATT
GAAGTAGCTC CTGGCGATTT CGTTTCTGTT GCTATTGACG CTCTAGAGAA CGGCTATGGC
GACACAATCC TTTCCCGTGA TAAAGCTAAG CGCTTGGCAT CATGGATGAA CTTAGAAAAA
GCTCTCGAGC AAGCTGAGAT CGTTACCGGT ACCGTTACTG GTAAGGTTAA AGGCGGCTTG
ACTGTAATGG TTAACGGTAT CCGCGCATTC TTGCCTGGAT CACTCGTTGA TACACGTCCA
ATCAAAGACA CCAGCCCTTA CGAAGGTAAG ACGATGGAGT TCAAGGTTAT CAAGCTTGAC
CGTAAGCGTA ACAACGTAGT GTTGTCACGT CGTGCAGTTG TTGAAGCCAG CCAAGGTGAA
GAGCGTGCTA AGTTGATGTC TAACCTTAAA GAAGGCGCAG TGGTTACTGG CCTCGTTAAG
AATATCACTG ACTACGGCGC ATTCGTTGAC CTCGGTGGTA TCGATGGTCT CTTGCACATC
ACTGACTTGG CATGGCGTCG TGTGCGTCAC CCAAGCGAGA TGCTGACTGT TGGTCAAGAA
GTTACCGCTA AGATTTTGAA GTTCGATCAA GAGAAGAACC GTGTTTCACT TGGCGTGAAG
CAGCTTGGTG ATGATCCATG GGTTGGTATC GCTCGTCGCT ACCCACCAAA CACCCGTTTA
TTCGGTAAGG TAACTAACCT GACTGACTAC GGTGCATTCG TGGAAATCGA ATCTGGTATC
GAAGGTTTGG TACACGTTTC TGAAATGGAT TGGACCAACA AGAATGTTGC TCCAAGCAAA
GCTACTGCAT TAGGAACCGA AGTTGAAGTA ATGGTTCTGG ATATTGATGA AGATAAGCGT
CGTATTAGCT TGGGCATCAA GCAGTGCAAA GCTAATCCAT GGGAAGAGTT CTCACGCGCC
CAACAAAAAG ACGATAAGCT CACTGGCGCA ATCAAGTCTA TTACTGACTT TGGCGTGTTC
ATTGGCTTGC CTGGTGGTAT CGACGGTTTA GTTCACCTCT CAGACCTTTC ATGGAATGAG
CCAGGCGAAG AAGCTGTTAA GAAATACAAA AAAGGTGACG AAGTTGAAGC CACTGTATTG
GCAATTGATG TTGAGAAAGA GCGTATCTCT CTTGGTATTA AGCAATTGTC TGGCGACCCA
TTCAACAACT ACACATCTGT CAGCGACAAG GGTAGCCTCG TTACTGGTAC TGTGAAAGCG
GTTGATGCTA AGGGTGCAAC AATTCACTTG GCTGATGAAG TTGAAGCCTA CTTGCGTGCT
TCTGAGATCT CAACAGATCG CGTTGAAGAT GCACGTAATG TATTGAAAGA AGGTGATAGC
GTAACTGCTA TGATCATTAA TATAGATCGT AAGTCACGCG TTATCAATCT TTCAATCAAG
GCAAAAGACA GCTCTGATCA ACAAGATGCA ATGAGCAAGC TCCAAGGTGA TGCGCAGTCT
GGCACAACCA ATTTGGGCGC TTTGTTAAAA GCAAAATTGG ATAATCAAGG CTAA
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| Protein sequence | MSESFAELFE ESLTRSNMKT GQVISAEVLR IDHNFVVVNA GLKSEAFIPV EEFHNDAGEI
EVAPGDFVSV AIDALENGYG DTILSRDKAK RLASWMNLEK ALEQAEIVTG TVTGKVKGGL
TVMVNGIRAF LPGSLVDTRP IKDTSPYEGK TMEFKVIKLD RKRNNVVLSR RAVVEASQGE
ERAKLMSNLK EGAVVTGLVK NITDYGAFVD LGGIDGLLHI TDLAWRRVRH PSEMLTVGQE
VTAKILKFDQ EKNRVSLGVK QLGDDPWVGI ARRYPPNTRL FGKVTNLTDY GAFVEIESGI
EGLVHVSEMD WTNKNVAPSK ATALGTEVEV MVLDIDEDKR RISLGIKQCK ANPWEEFSRA
QQKDDKLTGA IKSITDFGVF IGLPGGIDGL VHLSDLSWNE PGEEAVKKYK KGDEVEATVL
AIDVEKERIS LGIKQLSGDP FNNYTSVSDK GSLVTGTVKA VDAKGATIHL ADEVEAYLRA
SEISTDRVED ARNVLKEGDS VTAMIINIDR KSRVINLSIK AKDSSDQQDA MSKLQGDAQS
GTTNLGALLK AKLDNQG
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