| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1306 |
|---|
| Symbol | |
|---|
| ID | 6183435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1128509 |
|---|
| End bp | 1129720 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671867 |
|---|
| Product | tetratricopeptide repeat protein |
|---|
| Protein accession | YP_001798040 |
|---|
| Protein GI | 171463927 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.250179 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.00000292633 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTCAGA TAGCTACCGC TTGGTTATTG CTGCTACCGG TCATGTTTGG CATCGGTTGG
CTGGCTGCAC GTTGGGACTT GCGTCTTGAG AACCGGATGG ATGAGCGTGA GCGTATGCGT
CAGCAACGCT CCACCTTTAA AGGTCTAAGC CTTTTGCTCA ATGAACAGCC TGATCAGGCA
ATTGAAACGC TGGTCAAAAT TGCTCAGTTA GATCCAGAAA CAATCGAACT CCATTTTTCA
TTAGGCAATT TATTCCGTCG TCGCGGTGAG ACCGAGCGCG CTATCCGCGT GCATCAGCAT
TTGGCGAATC GCGATGACTT AAAGCCACGT GATCGAGATC ATGCTGCTTA TGAATTGGGC
CGCGACTTTT TGCGAGCTGG CCTATTTGAC CGAGCTGAAG CATCGCTTAA TCGAGTGGGT
GATGGCAAGT ACGCTGAACC AGCAAAAGAA AGTTTGTTGG AGATGTATCA AATTGAGCAT
GACTGGAAAA AAGCCATCAT CGCTGCTAAT GAGCTTGAGA CCTTGCAGGG TAAATCACAC
CATACTGAGA TTGCGCAATT TCACTGTGAG CTTGGTCAAG AAGCATTACG TCGTAAAGAC
TTAGCTGAAG CCGAGCAATC GATACAGCGT GCATTACAGG CGGTTCCTAA CCATGCTCGC
GCTTTAATCT TGCAAGGCGA TTATTTGATG GCAATGGATC GACCCACCCA AGCAATTGAA
GCTTGGGGAT TGATTGCCAG CTCTCATCCT GCCTATATGC ATTTATTGGC GGATCGTTGG
ATGTTGGCGC ATGCTGCTAT TAACAAAGAG AGCGAAGGCT TAGATCGCCT TTGTGATTTA
CTCAAAACTC AAGCTACAGG AGAGTTGCTT GACATAGTTC ACAAGCATCT CATGAAAATT
CGTGGTCCCC AAGCGGCAAA CGCTATGTTG TCAGATGTAA TGCAGCATTC ACCAACTTTA
ATTGCTTTAT CTAAGTTGGC GGAAACCTGT TTTGCCTTAG AAGAGGGTAG CGCCAATCCT
GAGAGGCTAT TGGAGCTGCA ATCCATACTG AATTTGTTGC GCCAGCGAAC AACGAGTTTG
GCTCGTTACA CTTGTGGTAA CTGTGGATTT AGAGCGCGAA GATTTTATTG GCAGTGTCCT
GGTTGTAATC ATTGGGAAGC ATATTCCCCA AGGCGTAGTG AAGGTTCTGC ACCAAGCGGT
CCTTCAATGT AA
|
|---|
| Protein sequence | MIQIATAWLL LLPVMFGIGW LAARWDLRLE NRMDERERMR QQRSTFKGLS LLLNEQPDQA
IETLVKIAQL DPETIELHFS LGNLFRRRGE TERAIRVHQH LANRDDLKPR DRDHAAYELG
RDFLRAGLFD RAEASLNRVG DGKYAEPAKE SLLEMYQIEH DWKKAIIAAN ELETLQGKSH
HTEIAQFHCE LGQEALRRKD LAEAEQSIQR ALQAVPNHAR ALILQGDYLM AMDRPTQAIE
AWGLIASSHP AYMHLLADRW MLAHAAINKE SEGLDRLCDL LKTQATGELL DIVHKHLMKI
RGPQAANAML SDVMQHSPTL IALSKLAETC FALEEGSANP ERLLELQSIL NLLRQRTTSL
ARYTCGNCGF RARRFYWQCP GCNHWEAYSP RRSEGSAPSG PSM
|
|---|
| |