| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1288 |
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| Symbol | |
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| ID | 6183927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1114463 |
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| End bp | 1116250 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671854 |
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| Product | acyl-CoA dehydrogenase domain protein |
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| Protein accession | YP_001798027 |
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| Protein GI | 171463914 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 0.197154 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATACG TAGCCCCAGT GAAAGATATG TTGTTTGTGA TGAATGAACT AGCTGGGCTA
TCGGATGTCG TTGCCTATCC TTCTTATGTT GAAGCAGGGG CTGATGTTGA TTTAGCGCCT
GCTATTTTGG AAGAGTCCGC TAAATTTAAT CAAGATGTGG TTGCGCCCCT GAATTGGGCT
GGCGATCAAA ACCCAAGCTC CTTAAAAGAT GGCGTGGTTA CAACTACCCC TGGTTTCAAG
AACGCATTTG AGCAATACGC TGCAGCAGGA TGGCAGGGCG TAATTCATCC GGTAGAGTTT
GGCGGTCAAG GCTTACCCAA ATTGATTTCC ACTGCTTGTT TAGAAATGGT AAATGCTGCA
AATCTTTCTT TTGCACTTTG CCCATTGCTA ACTGACGGCG CTATTGAGGC TCTATTAACC
GCGGCAAGTC CAGCACTTCA AGAGCAATAC GTCCCTAAAA TGATTTCCGG CGAGTGGACT
GGAACCATGA ACCTTACGGA GCCACAGGCT GGCTCCGATT TATCGATGGT GTGTTCACGT
GCTGTCCCTG AGGGTGATGG TACTTACAAG ATTTTTGGCA CCAAAATCTT CATCACTTAT
GGTGAGCACG ATATGGCCAA AAATATTGTC CATTTGGTGC TAGCAAGAAC GCCTGATGCG
CCTGAAGGCG TGAAGGGGAT TTCTTTATTC GTAGTGCCCA AGTTCTTGGT GAATGCTGAT
GGTTCTTTGG GCGAGCGCAA TGATGTGCAT TGTGTGTCAA TTGAGCACAA GCTTGGTATT
AAGGCGAGCC CAACAGCAGT TCTGCAGTTT GGGGATCATG GTGGCGCGAT CGGCTATTTG
GTTGGCGAAG AAAACCGCGG CCTTGAATAC ATGTTCGTCA TGATGAATGC GGCCCGCTTT
GCAGTGGGTA TGCAGGGGAT TGCTGTAGCA GAGCGCGCTT ATCAAAAGGC CGTTCAATAC
GCAAAAGATC GCGTACAAAG TCGTGACTTA GCTGGATCCC CAGGTCCTGT CGCGATTATT
CATCAGCCGG ACGTAAAGCG TATGCTGATG ACAATGCGTG CTTATATAGA GGCATCACGC
GCATTGGCTT ACTACGCTGC TTCTGCATAT GACGCGCAGC ACGCTGCACC GGATGAAGCG
GTTCGTAAAG CCAATCAAGC TGTCTATGAA TTCTTAGTGC CAATCGTCAA AGGCTTTTCT
ACAGAGATGT CAATTGACGT TGCGAGCTTA GGTGTTCAAG TGCATGGTGG TATGGGCTTT
ATTGAAGAGA CCGGCGCTGC TCAGCACTAT CGTGATGCCC GCATCTTGAC GATTTATGAA
GGTACTACCG CCATTCAAGC AAATGATTTG ATTGGCAGAA AAACAGTGCG TGATGGCGGT
GCTATTGCTA AGGAGCTGTC TCAAAGAATT GCCGCAACTG AAAAAGATTT AGCTGCTAGT
GGTTCAGCAG ATGCTAAAGC AATGCTTAAG CAACATACTC TAGCTCGTGC TGCATTCGAT
CAGGCTGTGG CCTATATCGT TACTAATGCA AAGACCGATA TCAAGGCGGT CTACGCAGGC
AGTTTTGCTT ACCTCCGTTT ATCGGGTCTA GTCTTGGGTG GTTGGCAAAT GGCGCGAGCA
CTCTTAGCTG CTGAACGTTT GCGTGATGGT GACCCTAGCT TCTATAGTGC AAAAATTGCT
ACAGCACGTT TCTTTGCTGA AAACCTGATG CCTCAGTCGC AAGCGCTGGC AACTTCGATT
GTAGAAAGTA GCCACTCTTC AAACGCATTA GAGGTTGAAC AGTTTTAG
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| Protein sequence | MPYVAPVKDM LFVMNELAGL SDVVAYPSYV EAGADVDLAP AILEESAKFN QDVVAPLNWA
GDQNPSSLKD GVVTTTPGFK NAFEQYAAAG WQGVIHPVEF GGQGLPKLIS TACLEMVNAA
NLSFALCPLL TDGAIEALLT AASPALQEQY VPKMISGEWT GTMNLTEPQA GSDLSMVCSR
AVPEGDGTYK IFGTKIFITY GEHDMAKNIV HLVLARTPDA PEGVKGISLF VVPKFLVNAD
GSLGERNDVH CVSIEHKLGI KASPTAVLQF GDHGGAIGYL VGEENRGLEY MFVMMNAARF
AVGMQGIAVA ERAYQKAVQY AKDRVQSRDL AGSPGPVAII HQPDVKRMLM TMRAYIEASR
ALAYYAASAY DAQHAAPDEA VRKANQAVYE FLVPIVKGFS TEMSIDVASL GVQVHGGMGF
IEETGAAQHY RDARILTIYE GTTAIQANDL IGRKTVRDGG AIAKELSQRI AATEKDLAAS
GSADAKAMLK QHTLARAAFD QAVAYIVTNA KTDIKAVYAG SFAYLRLSGL VLGGWQMARA
LLAAERLRDG DPSFYSAKIA TARFFAENLM PQSQALATSI VESSHSSNAL EVEQF
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