Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1284 |
Symbol | |
ID | 6183644 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 1112293 |
End bp | 1112847 |
Gene Length | 555 bp |
Protein Length | 184 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641671850 |
Product | 16S rRNA processing protein RimM |
Protein accession | YP_001798023 |
Protein GI | 171463910 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.270543 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 0.304592 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCAC CTTCCCTAAA TGATTTGATT GAACTTGGCG CCATATCTGA GGCGCAAGGG TTGCGAGGCC AAGTGAAGAT TAGGCCTCAC TCATCAGAGC CTGTAGCGCT TTTATCTTCA AAGTCAGTTT GGTTATCCTT GATCCCACGT AGGGATGCTG GTCTTTCTTC GCCCGTAGAG CAGGCATCGT TGACGCAATA CAAAGTGAAG AGCGCCAAGA TGCACAGTGG CAACGTAGTA ATAGCGCTAG AGGGTGTGAC TGATCGGGAT CAGGCGCTTG CACTAAAAGG CGCCAGAATT TTGGTTGCAC GTGACGCATT TCCAAAAGTG GAAACTGACT CGTACTACTG GATTGATCTT ATTGGGTGCA ACGCTATCAA TTTACAAAAT GAAACTCTTG GTGAGGTGAT TGATGTCACT GAGAATGGTG CACATGGCGT TATTGCTATT GGTGATGCAT CAACAAAAAC AATCCAGTAT TTGGTGCCAT TTGTGAAACA AGTGGTTCAG GACGTCGACC TATCAAATAA AACGATCTCG CTCGACTGGC AATAA
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Protein sequence | MSAPSLNDLI ELGAISEAQG LRGQVKIRPH SSEPVALLSS KSVWLSLIPR RDAGLSSPVE QASLTQYKVK SAKMHSGNVV IALEGVTDRD QALALKGARI LVARDAFPKV ETDSYYWIDL IGCNAINLQN ETLGEVIDVT ENGAHGVIAI GDASTKTIQY LVPFVKQVVQ DVDLSNKTIS LDWQ
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