Gene Pnec_1284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1284 
Symbol 
ID6183644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1112293 
End bp1112847 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content46% 
IMG OID641671850 
Product16S rRNA processing protein RimM 
Protein accessionYP_001798023 
Protein GI171463910 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.270543 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.304592 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCAC CTTCCCTAAA TGATTTGATT GAACTTGGCG CCATATCTGA GGCGCAAGGG 
TTGCGAGGCC AAGTGAAGAT TAGGCCTCAC TCATCAGAGC CTGTAGCGCT TTTATCTTCA
AAGTCAGTTT GGTTATCCTT GATCCCACGT AGGGATGCTG GTCTTTCTTC GCCCGTAGAG
CAGGCATCGT TGACGCAATA CAAAGTGAAG AGCGCCAAGA TGCACAGTGG CAACGTAGTA
ATAGCGCTAG AGGGTGTGAC TGATCGGGAT CAGGCGCTTG CACTAAAAGG CGCCAGAATT
TTGGTTGCAC GTGACGCATT TCCAAAAGTG GAAACTGACT CGTACTACTG GATTGATCTT
ATTGGGTGCA ACGCTATCAA TTTACAAAAT GAAACTCTTG GTGAGGTGAT TGATGTCACT
GAGAATGGTG CACATGGCGT TATTGCTATT GGTGATGCAT CAACAAAAAC AATCCAGTAT
TTGGTGCCAT TTGTGAAACA AGTGGTTCAG GACGTCGACC TATCAAATAA AACGATCTCG
CTCGACTGGC AATAA
 
Protein sequence
MSAPSLNDLI ELGAISEAQG LRGQVKIRPH SSEPVALLSS KSVWLSLIPR RDAGLSSPVE 
QASLTQYKVK SAKMHSGNVV IALEGVTDRD QALALKGARI LVARDAFPKV ETDSYYWIDL
IGCNAINLQN ETLGEVIDVT ENGAHGVIAI GDASTKTIQY LVPFVKQVVQ DVDLSNKTIS
LDWQ