| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1283 |
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| Symbol | trmD |
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| ID | 6183889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1111498 |
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| End bp | 1112244 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671849 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001798022 |
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| Protein GI | 171463909 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.136087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 0.338978 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCTTTG ATGTTGTGAC ATTATTCCCA GAAATGTTCT CCGCTTTAAC GCAGTGGGGT
ATTACTGGTC GCGCCTGTGA GCAATTTTTA GCCAGTGTCC ACCTATGGAA TCCTCGGGAT
TTTTGTTCGG ACCCTCGTAA AACGGTAGAT GATCGCGCCT ATGGGGGCGG CCCTGGCATG
GTTATGATGG TAAAGCCGCT AGAAGATACC GTTGCTGGAA TCAGAGCATC CCATGAGGCT
GCTGGAATCA AAAGTGGCCC AATTTGCTTA CTTGCCCCTC AGGGTGAGCG ATTTTCTCAG
AAGATAGCGA CAGATATCCT CAGTTATGGC AATTTAAGCT TCATTTGTGG TCGTTATGAG
GCTGTAGACC AGCGTTTTGT CGACCGAAAC GTTGATTTGC AGCTTTCTAT AGGCGATTTT
GTGCTTTCTG GGGGTGAAAT ACCTGCAATG GCCATGATGG ATGCGGTGAT TAGGCTTATT
CCCGGGGCTC TTGGGGATGG CCAATCGGCT ACCCAGGACA GCTTTATGAA TGGCCTTTTG
GACTATCCGC ACTACACTCG TCCTGAAATA TATGAAAATT TATCTGTTCC AGACGTGCTT
TTGGGCGGAC ATCACGCTAA AATAGTGGAT TGGCGTCGGC AGAAGTCTTT AGAGTTGACG
TTCAGGTTAA GGCTGGATTT AATTGAGTCG GCTAGAGCCA AAGGGTTGCT AACCCGAGAA
GATGAACAAT TTCTTCGCTC TCTGTAA
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| Protein sequence | MRFDVVTLFP EMFSALTQWG ITGRACEQFL ASVHLWNPRD FCSDPRKTVD DRAYGGGPGM
VMMVKPLEDT VAGIRASHEA AGIKSGPICL LAPQGERFSQ KIATDILSYG NLSFICGRYE
AVDQRFVDRN VDLQLSIGDF VLSGGEIPAM AMMDAVIRLI PGALGDGQSA TQDSFMNGLL
DYPHYTRPEI YENLSVPDVL LGGHHAKIVD WRRQKSLELT FRLRLDLIES ARAKGLLTRE
DEQFLRSL
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