| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1276 |
|---|
| Symbol | |
|---|
| ID | 6183237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1106396 |
|---|
| End bp | 1106992 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671844 |
|---|
| Product | oligoribonuclease |
|---|
| Protein accession | YP_001798017 |
|---|
| Protein GI | 171463904 |
|---|
| COG category | [A] RNA processing and modification |
|---|
| COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0268591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC AAATCAACAC TACGGCAACA CTACTAACCA AAGCGGCCCC CGCCAATGAA
CACCTTATTT GGGTGGATAT GGAAATGTCA GGTTTAAACC CCGAAACCGA GCGAATTTTG
GAAATCGCCA TCATTGTGAC AGATGCCCAC CTCAATACCA TCGCCACAGC GCCTGTCTGG
GTAATGCATC AGGAGAATGC TGTTCTAGAT GCAATGGATG CTTGGAATAA AGGCACCCAT
GGACGTTCTG GTCTGATTGA TAAGGTGAAG GCCTCCACTT TGGATGAGGC CGCTGTCGAA
GCAGAGTGCA TTGCATTTTT AAAAAAATAT ATTAAGGCCG GTATTGCGCC AATGTGCGGC
AATACGATTG GGCAGGACAG ACGCTTTATG GCGAAGTACA TGTCAAAGTT AGAGTCTTAC
TTTCATTATC GAAATATAGA TGTCTCCACT CTAAAAGAAT TATGTAAGCG TTGGCACCCT
GAGTTGGTGA AAGGCTTCAC CAAGAAGCAG GCTCATACGG CATTGGCTGA TATTGAAGAG
TCGATCGAAG AGCTGAAATA CTACCGCGAG AAGTTTATCG TACCCTTGCC TCAGTAG
|
|---|
| Protein sequence | MSEQINTTAT LLTKAAPANE HLIWVDMEMS GLNPETERIL EIAIIVTDAH LNTIATAPVW
VMHQENAVLD AMDAWNKGTH GRSGLIDKVK ASTLDEAAVE AECIAFLKKY IKAGIAPMCG
NTIGQDRRFM AKYMSKLESY FHYRNIDVST LKELCKRWHP ELVKGFTKKQ AHTALADIEE
SIEELKYYRE KFIVPLPQ
|
|---|
| |