Gene Pnec_1262 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1262 
Symbol 
ID6183472 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1094773 
End bp1096131 
Gene Length1359 bp 
Protein Length452 aa 
Translation table11 
GC content47% 
IMG OID641671832 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_001798006 
Protein GI171463893 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.826709 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value0.137617 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACTA AAAAAATCAA GTCAAAGATC AATCACTCAA AAAGGCAAAC CCTCAAGACC 
TCAGCCAAGT TCTTGAGCTT TGCCCTATTG CTGACAGAGC TTGATATTGC CTGGGGCGCC
AAGATTCTGG GTGTGCGCGT CTGGCCATCT GAGGACTACA CCCGCGTTAC TTTGGAATCT
GATACGCCGC TACCGATTAC GCAACAGATT CTGATTAATC CCGATCGCTT AGTGGTTGAT
GTGCAGGGAT TAGAGCTCAA TCCAACATTG AAAGATTTGG TAGCTAAAGT AAAACCAAAC
GATCCTTACA TCTCACAAGT TAGAGTGGGA CAATTTCAAC CAGGCATTGT GCGTTTGGTG
TTTGACTTAA AAGAGCCCAT CAAGCCACAA CTATTTACGC TTGATCCGGT GGCTGAATAT
AACTATCGCA TGGTGTTTGA TTTGTACCCC ACTACACCAC CAGATCCTTT AATGGCTTTA
GTGAGAAGTA GCGCCAAGAA AGAAAGTGCA CTTGAGAAAT CCAATGAAGA AGTGGATTTG
ATTGCGCAGT TTGCAACCAA GAAAGAAAAA GAGTTTGCCA AGACTCCAGC GGCGCCAGTT
GCCCAAGCTA TTCCTGAGCC AAAGGAACTG CCAGCACCCG CTAAATATAA GCGCCTAATC
ACGATTGCAA TTGATCCCGG CCATGGTGGC GAAGACCCGG GCGCTATTGG TGCAGCAGGC
TCTAGAGAAA AGAATGTCGT GCTCGCCATC GCCAAGCGAC TCAAAGACAA GATTGAAGGC
GAAGCTTATA TGCGCCCTTT CTTAACCAGA GACGGCGATT ACTTTGTACC CTTGCATGTC
AGAGTACAAA AAGCCAGACG TGTTGAAGCG GATTTATTTG TATCGATTCA TGCAGATGCC
TTTATTGAAA GAAATGCCAA AGGTGCTTCC GTATTTGCAC TCTCGCAAAT GGGGGCCAGT
AGCACTACTG CGCGCTGGAT GGCCAATAAA GAAAATGCTT CTGACTTGAT TGGTGGCATC
AATATCAAGA CACAAGACAG GCAGGTTGCC AACCTACTTT TAGACATGTC GACCACGGCG
CAGATCAAAG ACTCCCTGCA AGTGGGCAAC TCGATCTTGA GACAAATCGG GGGATTTGCG
CCTCTACACA AGCCCAAGGT TGAGCAAGCC AGTTTTGCTG TTTTAAAGGC TCCAGACATC
CCCTCCATCC TCGTAGAAAC CGCTTTTATC AGCAATCCAC AGGAAGAGGC CCGCCTAAAT
GATGACGGCT ACCAGGATCG CATTGCAGAG GCGATCTTGA GAGGAATTAA GGAGTATTTT
TCCAAAAATC CACCGGTCGC CAGACGGGTA AATTCATAA
 
Protein sequence
MDTKKIKSKI NHSKRQTLKT SAKFLSFALL LTELDIAWGA KILGVRVWPS EDYTRVTLES 
DTPLPITQQI LINPDRLVVD VQGLELNPTL KDLVAKVKPN DPYISQVRVG QFQPGIVRLV
FDLKEPIKPQ LFTLDPVAEY NYRMVFDLYP TTPPDPLMAL VRSSAKKESA LEKSNEEVDL
IAQFATKKEK EFAKTPAAPV AQAIPEPKEL PAPAKYKRLI TIAIDPGHGG EDPGAIGAAG
SREKNVVLAI AKRLKDKIEG EAYMRPFLTR DGDYFVPLHV RVQKARRVEA DLFVSIHADA
FIERNAKGAS VFALSQMGAS STTARWMANK ENASDLIGGI NIKTQDRQVA NLLLDMSTTA
QIKDSLQVGN SILRQIGGFA PLHKPKVEQA SFAVLKAPDI PSILVETAFI SNPQEEARLN
DDGYQDRIAE AILRGIKEYF SKNPPVARRV NS