| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1249 |
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| Symbol | |
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| ID | 6183491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1081221 |
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| End bp | 1084838 |
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| Gene Length | 3618 bp |
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| Protein Length | 1205 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671823 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_001797997 |
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| Protein GI | 171463884 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.96646 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 0.456819 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTAC CCCGTTTTGT ACATCTCCGC GTCCACTCCG AGTTTTCGAT TACGGATGGA
GTCGTTCGCA TTGATGATGC GGTCGCCGCG GCTGTCAAAG ATGGGATGGG CGCTCTAGCC
ATCACGGATT TAAGCAATTT ATTCGGTTTA GTCCGTTTTT ATACTGCCGC TCGTTCGAGT
GGGATTAAGC CAATTACTGG TGCTGATGTT TGGATTAGTA ATCCTCAGGA TCCAGATCAA
CCCCATCGTT TATTGCTCTT AGTGCAAAAC CACTCTGGCT ATCTCAATTT ATGTGAACTG
CTTAGTCGAG CATCTTTAGA TAACCAATCT CGTGGTCGTG CTGAAGTCGA TTCAGCATGG
TTTAGTGAGC CTGCTGCCAA AACTGAAGAT AAAGCTGCCA AGCGGACCTT ACCTTACGGA
TTGATTGCTC TCTCCGGAGC GCGTATGGGT GAAGTGGGTG CGGCGTTACT GGCTGGTCAA
GCAGATCAGG CCAAGATTGT TGCGCGGCGC TATGAAAAAC TTTTCCCCAA GTCCTTCTAT
ATTGAAGTTC AGCGTGGCGG CAATCCGCAA GACGAAAGAC ATCTACAGCT GGCATGTCAT
TTAGCGAGCG AGCTTGATTT ACCTGTAGTA GCGACTCACC CAGTGCAGTT TATGCAAAGA
AGTGACTTTA CGGCGCATGA AGCCCGGGTA TGTATTGCTG AAGGAGAATT GCTTGGTAAT
CCGCGTCGCA CCAAAAAGTT TAATGAAGAA CAATACTTCT TAACCCAAGA AGAGATGGAA
AAACGTTTCG CAGATTTGCC GGTCGCATTA GCGAACTCGG TTGAAATTGC TAAGCGTTGC
AATCTCTCTC TGGTCTTAGG TCAACCACGC TTGCCAGATT TTCCGACGCC TCCAGGCATT
ACTTTGGACG AGTATCTACT TGCTCAATCT GAAGTTGGTC TAGAACGCCA CATGGAGCGC
AACTTTCCGG ATCCTGAGGA ACGCGCAAAA GAAATGGCGC GTTATCACGA GCGCTTGGTA
TTTGAGGTGA AGACTATTTC TCAAATGGGC TTCCCAGGCT ACTTCTTAAT CGTTGCAGAC
TTCATTAATT GGGCTAAGAA CAATGGCGTG CCAGTGGGAC CTGGTCGTGG ATCGGGTGCG
GGTTCTTTAG TTGCTTACTC ACTCGGTATT ACCGATTTAG ATCCACTGCG TTACAACTTG
CTCTTTGAGC GCTTTTTAAA TCCAGAGCGG GTATCAATGC CCGATTTTGA TATCGACTTC
TGCCAGCACG GCCGCGACCG TGTGATTCAG TACGTAAAAG ATAAGTATGG CAAAGACGCG
GTAAGTCAGA TTGCTACTTT CGGGACTATG GCTGCCAGAG CGGCGATTCG CGATGTGGGT
CGCGTTTTAG AGCAGGGCTA TAACTTCGTA GACGGCATCG CTAAGCTTGT GCCAAATAAG
CCAGGTCAGT ACATGACCAT CGAAATGGCG AAGAAAAAAG AAAAGCAATT AGCCGAGCGC
GAGAAGAATG AAGACGAAGT GCGTCAGTTG CTTTCTTTGG CGCAACAATT AGAGGGTATG
ACCCGCAACG TAGGCATGCA TGCCGGTGGT GTATTGATTG CTCCGGGTCG CCTCACCGAT
TTTTGTCCTC TGTACACCCA AGAAAGTAAA GATCAAGACA GCAGCTCGGT TATTAGCCAG
TTCGATAAAG ATGACGTAGA GGCGGTTGGT CTAGTGAAGT TCGACTTCTT GGGCTTGACT
ACCTTAACCA TCCTGGCCGC GGCAGAGCGT TGGATTAAAG CCTTGCACGC CGATCGAAGA
GATTGGAATA TCGGCGAGAT TCCGCTCGAT GATGAGAAAG CCTTTGATGT ACTTAAACGC
GCCAATACAG TCGCCGTCTT CCAGCTAGAA AGCCGCGGCA TGCAAGGCAT GCTTCGTGAA
GCTAAGCCGG ACCGCTTTGA GGACATTATT GCCTTGGTAG CTTTATATCG CCCAGGTCCA
ATGGACTTGA TACCTGATTT TATTGAACGT AAACATGGCC GTCAAAAAGT AGAATATCCC
GATCCCCGTA TTGAACCTGT TCTGCGCGAG ACCTACGGCA TCATGGTCTA CCAAGAGCAG
GTGATGCAGA TGGCGCAGAT GATTGGCGGC TACTCATTGG GCGGCGCAGA CATGTTACGT
CGGGCGATGG GTAAGAAAAA GCCAGAAGAG ATGGCGCAGC ATCGTAAGAT CTTTAGTGAT
GGTGCAAAAG CGGGCGGCAT TTCTGAGGGT AAGGCAAACG AAATCTATGA CTTGATGGAG
CGTTTTGCGG GCTATGGATT TAATAAGTCC CATGCTGCTG CTTACGCACT CTTGGCATAT
CAAACCGCTT GGCTAAAGGC TTATTACCCA GCTGAATTTA TGGCGGCCAA CTTATCGCTC
GCTATGGATG ACACCGATAA GGTGAAGATT CTGTATGACG ACTGCTTGGT TAACAATATT
CGAGTCTTCT CGCCAGACAT TAATACTGGT GTGTATGAGT TTACACCATT GCGTGCTCCT
GATGCAGCTC CAGATTCTCC TATCAGTCAT GTTCGCTATG GATTGGGCGC AGTACGTGGC
ACGGGCGAAG CTGCAATCGA GTCGATCGTT AAGGCACGTG AAACTGGCGG TCCATTTAAA
GACTTGTTTG ATTTTTGTGC CCGCGTTGAT CGCAGGCAAG TCAATCGCCG CGCCATTGAA
GCCTTGATGC GGGCTGGTGC ATTTGATGAT TTGTATCGTG ACTCTGTGCC TGCAGGTGGC
AACCTTTACG ACATCCGATC TACCTTACTT GCTTCATTAG CGAGAGCTAT TGAAGCTGCC
GAGCAGGCAG AGGCATCTAT TTATCAAGTG AGTTTATTTG AAGTGGCTGG TGAGGAGAAT
CGCCATCTAC CTGAGTTAGT GCGTGAGCCA GTTTGGTCCG AGAAAAAACG TTTGCAAGAA
GAGAAAACTG CTTTGGGCCT CTGTTTAACA GGGCATATGT TCGATGCCTA TCGTGACGAG
ACATCGCACT TTATTCGTCA GCCACTATCA AAAGTTACTG AAGGTAAAGA TCAGCTGATT
GCCGGCATTA TTACTTCTGC GCGGATGCTT ACGGGCCAAC GTGGCCGCAT GATGATTGCG
ACGATTGATG ATGGTACTGC AGCTTTGGAG GTTACTCTAT ATAGCGAAGT ATATGAACCT
AATCGATCTT GGCTCAAAGA AGATGAACTC TTGGTTGCCA AAGTCAATGT GACGCCTGAC
AAGTTTTCAG GTGGCATGCG CATTGTGTCT GAGGCAGTAA TGGATATTAC TGGTGCGCGG
ATGCGTTTTG CGCATAATGT TCATGTCTGT ATTGATAACG TAATTGACAT CAAAATGCTC
CGTAGCCAAA TCAATCCTTA TCTTATGGCT AATCGCGTTA GGGATCTAAA ATTGGGCGCA
TCAGCTCCTG CCGCTCCGGG GTCTAATGAT GGTATGAAAG GTTTGATGTT GACTGCTGCA
GTGACGACCA GTGGTGGCGC CTGTTTAATG CAGTTCCCAG AAGAGCTGCG CATCTACCCA
GATGATGCCT GCCTACATGG CTTGAATCAG ATTTTGGCTT CCAAACAAAA AGATCCCGTA
CAGGTTCAGT ACCACTAA
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| Protein sequence | MALPRFVHLR VHSEFSITDG VVRIDDAVAA AVKDGMGALA ITDLSNLFGL VRFYTAARSS
GIKPITGADV WISNPQDPDQ PHRLLLLVQN HSGYLNLCEL LSRASLDNQS RGRAEVDSAW
FSEPAAKTED KAAKRTLPYG LIALSGARMG EVGAALLAGQ ADQAKIVARR YEKLFPKSFY
IEVQRGGNPQ DERHLQLACH LASELDLPVV ATHPVQFMQR SDFTAHEARV CIAEGELLGN
PRRTKKFNEE QYFLTQEEME KRFADLPVAL ANSVEIAKRC NLSLVLGQPR LPDFPTPPGI
TLDEYLLAQS EVGLERHMER NFPDPEERAK EMARYHERLV FEVKTISQMG FPGYFLIVAD
FINWAKNNGV PVGPGRGSGA GSLVAYSLGI TDLDPLRYNL LFERFLNPER VSMPDFDIDF
CQHGRDRVIQ YVKDKYGKDA VSQIATFGTM AARAAIRDVG RVLEQGYNFV DGIAKLVPNK
PGQYMTIEMA KKKEKQLAER EKNEDEVRQL LSLAQQLEGM TRNVGMHAGG VLIAPGRLTD
FCPLYTQESK DQDSSSVISQ FDKDDVEAVG LVKFDFLGLT TLTILAAAER WIKALHADRR
DWNIGEIPLD DEKAFDVLKR ANTVAVFQLE SRGMQGMLRE AKPDRFEDII ALVALYRPGP
MDLIPDFIER KHGRQKVEYP DPRIEPVLRE TYGIMVYQEQ VMQMAQMIGG YSLGGADMLR
RAMGKKKPEE MAQHRKIFSD GAKAGGISEG KANEIYDLME RFAGYGFNKS HAAAYALLAY
QTAWLKAYYP AEFMAANLSL AMDDTDKVKI LYDDCLVNNI RVFSPDINTG VYEFTPLRAP
DAAPDSPISH VRYGLGAVRG TGEAAIESIV KARETGGPFK DLFDFCARVD RRQVNRRAIE
ALMRAGAFDD LYRDSVPAGG NLYDIRSTLL ASLARAIEAA EQAEASIYQV SLFEVAGEEN
RHLPELVREP VWSEKKRLQE EKTALGLCLT GHMFDAYRDE TSHFIRQPLS KVTEGKDQLI
AGIITSARML TGQRGRMMIA TIDDGTAALE VTLYSEVYEP NRSWLKEDEL LVAKVNVTPD
KFSGGMRIVS EAVMDITGAR MRFAHNVHVC IDNVIDIKML RSQINPYLMA NRVRDLKLGA
SAPAAPGSND GMKGLMLTAA VTTSGGACLM QFPEELRIYP DDACLHGLNQ ILASKQKDPV
QVQYH
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