Gene Pnec_1242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1242 
Symbol 
ID6183737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1074234 
End bp1074641 
Gene Length408 bp 
Protein Length135 aa 
Translation table11 
GC content49% 
IMG OID641671817 
ProductrRNA large subunit methyltransferase 
Protein accessionYP_001797991 
Protein GI171463878 
COG category[S] Function unknown 
COG ID[COG1576] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCTTA CCATTGTTTC AGTTGGTCAT AAGATGCCTG ATTGGGTTGC TACGGCAACT 
ATTGAAATCA AAGAGATCAA ACCAGATCTC ACACTTGCTA AAGAAGCAGT CAAAATTGCT
GCAGCTATTC CGAAAGGCTC TAGAGTCATC GCCTTGGATG AGCGAGGCAA AGACCAGACC
ACTCAAAATT TAGCCACTCA ACTAGCCAGC TGGCGCCAAG AAGGTTTTGA TATCACCTTC
TTAATTGGCG GCGCAGATGG CTTGGATCCC AGCCTGAAAA CGACTGCGCA AGCTATATGG
CGTCTCTCTA GCTTGACTCT GCCGCATGCT ATGGCCAGAG TACTATTGGT TGAGCAACTC
TACCGAGCCT GGACTATCTT GCAGGGTCAC CCTTACCATC GCGAGTAA
 
Protein sequence
MRLTIVSVGH KMPDWVATAT IEIKEIKPDL TLAKEAVKIA AAIPKGSRVI ALDERGKDQT 
TQNLATQLAS WRQEGFDITF LIGGADGLDP SLKTTAQAIW RLSSLTLPHA MARVLLVEQL
YRAWTILQGH PYHRE