| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1232 |
|---|
| Symbol | |
|---|
| ID | 6183307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1064205 |
|---|
| End bp | 1064669 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641671807 |
|---|
| Product | DNA polymerase III chi subunit HolC |
|---|
| Protein accession | YP_001797982 |
|---|
| Protein GI | 171463869 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2927] DNA polymerase III, chi subunit |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGTA TTGATTTTCA TAGCAACGTA AGTGATAAGC TGGAATACGC TTGTCGCTTA
GCGCGCAAGA TTTGGAGTGC TACGCCGGAG GGCGAGCCAG TTCGCAATAT TGTGATGGTG
GGCGAGAAGG CGGATCTACA AAAATTAAAT GATCTGCTGT GGTCATTTAG CAGCACTGAT
TTTTTGCCAC ACTGTTTTAT CGAGGATGAT GCTGCAGCAG AAACGCCCAT CGTCTTGACG
GATGATTTTG CTTCAGCAGT CTTGGGCAAC CTCCTTCATG CGGATGTCAT GATTCACCTA
GGCATGCGGA TGTCTGCAGA TGTGCCAGCG TTAGTGGCGC GCTACCCTCG AATCGTGGAG
GTGGTGACTG TCAATGAAGC AGAGCGTTTA GCAGGGCGTG AACGCTTTAA AGCCTACCGA
GATCTGGGTC ATGAATTGCA TAACTTTGAC CAGTCTAAAA GCTAG
|
|---|
| Protein sequence | MARIDFHSNV SDKLEYACRL ARKIWSATPE GEPVRNIVMV GEKADLQKLN DLLWSFSSTD
FLPHCFIEDD AAAETPIVLT DDFASAVLGN LLHADVMIHL GMRMSADVPA LVARYPRIVE
VVTVNEAERL AGRERFKAYR DLGHELHNFD QSKS
|
|---|
| |