Gene Pnec_1228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1228 
Symbol 
ID6183519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp1061073 
End bp1062365 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content45% 
IMG OID641671803 
ProductMalonyl-CoA decarboxylase 
Protein accessionYP_001797978 
Protein GI171463865 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones78 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGAAA AGTTAGCAAA AGCCCGCAAC CTGTCAAAGG CAAACAACGC CATTAAGCGC 
TTGATTTCTG AGCGGGGCGA ATCCAATGCG GTCAGCATGG CAGATGATGT TGCTAACAAT 
TATCGGAAGC TAGCAAAAGA TCAACATATT CCGTTCTTCA CCTATTTATT TGAGAAATTA 
AATCCTCAGG TCGATGCAAT TCTCAAGGCG GCACAAAATT TTGCTGCTGA ATCTACAGCA 
CGCAATTACA TTCAATTGCA GAAAGTGTCC GAATCTCCTC GGCAAGAATT ATTTCGTCAC 
CTAAATCGCG CGGGTCATGG CACTGCTGCT GTAGTGCAAA TGCGTCGCGA TCTTTTACAA 
CTCTTGGACA AAAAGCCAGA GCTTGCTGCA GTAGATTTTG ATATGCGCCA CCTTCTGTCA 
TTTTGGTTTA ATCCAGGATT TTTGAAAATG CACCGCGTTG ACTGGAAATC ACCTGCAGAA 
GTCTTGGAGA AGTTAATTCA TCATGAAGCG GTACATGCTA TTGATGGCTG GGATGACTTG 
CGTCGCCGCC TGCAGCCTGA TCGTCGCTGC TTTGCCTTCT TTCATCCACA ACTTCCCAGC 
GAGCCTCTAA TCTTTGTCGA AGTGACTCTA TTGCCAGAAA TCCCAACGGT TATTACTCCA 
TTGGTCGATA AAAAAGCGGA GACCGTTGAT CAGCCATCGC AATACAAGGT TGCAGTGTTT 
TACTCAATTA GTAACTGTGA GCCTGGCTTG CGTGGCGTGT CGATGGGTAA CTTCTTAATT 
AAGCGCGTTG CTGAACAGTT GCATGCCGAA TTCCCTGGGC TTAAAACTTT TGTCACTTTA 
TCTCCCATTC CTGGGTTTAT GGATTGGGTA TCAGCCGGTG CCAATTTAGG TGAAGATGTT 
CCTGCAGAAA AATTAAAGCC AAATTTAAGA GCGGCGCGTG ACCAAGCCTT AGCAACTCTT 
AAGTTAGATG CGCAGTCATG GACTGAAAAA TTAAGTGCTG GATGGCATCC GGATTTAGCC 
TCTCCAAAGG AACAAGAAGC TTTGCTGTGT TTAGCTTCGA TCTATTTTGG TCTGGGCTCA 
ACCGGTCGCA ACGGCAATCC AGTTGCTAAA TTCCATTTGG GTAATGGCGT AAAACTGCAT 
TTAGTTAATT GGACGGGTGA TTTGTCTCGC AAGGGCTTGC GTCAATCTGC AGGCTTGATG 
GTGAATTATC TTTACGACCT CGGTAATGTT GAGGAGAACC ATGAGAAATT TGCCAATGGT 
GGATTGTGTA TTCAAGATCG GTTGGTCGCC TAA
 
Protein sequence
MLEKLAKARN LSKANNAIKR LISERGESNA VSMADDVANN YRKLAKDQHI PFFTYLFEKL 
NPQVDAILKA AQNFAAESTA RNYIQLQKVS ESPRQELFRH LNRAGHGTAA VVQMRRDLLQ 
LLDKKPELAA VDFDMRHLLS FWFNPGFLKM HRVDWKSPAE VLEKLIHHEA VHAIDGWDDL 
RRRLQPDRRC FAFFHPQLPS EPLIFVEVTL LPEIPTVITP LVDKKAETVD QPSQYKVAVF 
YSISNCEPGL RGVSMGNFLI KRVAEQLHAE FPGLKTFVTL SPIPGFMDWV SAGANLGEDV 
PAEKLKPNLR AARDQALATL KLDAQSWTEK LSAGWHPDLA SPKEQEALLC LASIYFGLGS 
TGRNGNPVAK FHLGNGVKLH LVNWTGDLSR KGLRQSAGLM VNYLYDLGNV EENHEKFANG 
GLCIQDRLVA