| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1217 |
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| Symbol | |
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| ID | 6183480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1051643 |
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| End bp | 1052515 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671798 |
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| Product | L-carnitine dehydratase/bile acid-inducible protein F |
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| Protein accession | YP_001797974 |
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| Protein GI | 171463861 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
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| TIGRFAM ID | [TIGR03253] formyl-CoA transferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.263756 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATGG CTTCTGTAAA AGGCTTTAGC GATAGCCACT CATACGAAGA CTTAAAAGTG
TATGAAAACG TTGCTCAATG TGCTGGCGGT GCTGCCTCTA CTACTGGTTT CTGGGATGGC
CCTCCTACAG TTTCTGCTGC TGCTTTGGGT GACTCTAATA CTGGTATGCA CTTGGCAATC
GGAATCTTGA CAGCGTTGAT GCAACGTGAA AAAACTGGCC GCGGTCAAAA AGTATCCTGT
TCAATGCAAG ATGCTGTATT GAACTTGTGC CGCGTGAAGT TGCGCGATCA ACAACGTTTG
GACAAAGTTG GTTACTTGGA AGAATATCCA CAGTACCCAC ATGGTTCATT CACTGACGTA
GTTCCACGTG GCGGTAACGC TGGTGGTGGC GGTCAGCCTG GTTGGATCGT TAAATGTAAA
GGCTGGGAAA CTGACCCTGA CGCTTACATG TACGCGATCG TTCAGGCTCC AGTTTGGGAG
GCTATTTGCA AAGTAATCGG TTGTGAAGAT TGGATTACTG ATGTACGTTT CGCTTCACCA
ATGGCACGCT TGCCGCACTT GATGGAAATT TTTGGTGAGA TCGAAAAGTG GACCATGACT
AAGACTAAGT TTGAAGTTAT GGATATTTTG AATCAGTACG ATATTCCATG TGGCCCAATT
CTTTCCATGA AAGAAATCGC CGAGGAGCCT GCATTGCGTG CTACTGGCAC TGTGGTTGAA
GTAGATCACC CAATTCGTGG CAAGTACCTT ATTGTTGGCA ATCCAATCAA GATGTCAGAT
AGTCCAACTG AAGTGACTCG CTCACCATTG CTCGGTGAGC ATACCGATGA GATTCTGCAT
GAGTTGGGTT ACTCCACAGA TGAGATGAGA TGA
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| Protein sequence | MIMASVKGFS DSHSYEDLKV YENVAQCAGG AASTTGFWDG PPTVSAAALG DSNTGMHLAI
GILTALMQRE KTGRGQKVSC SMQDAVLNLC RVKLRDQQRL DKVGYLEEYP QYPHGSFTDV
VPRGGNAGGG GQPGWIVKCK GWETDPDAYM YAIVQAPVWE AICKVIGCED WITDVRFASP
MARLPHLMEI FGEIEKWTMT KTKFEVMDIL NQYDIPCGPI LSMKEIAEEP ALRATGTVVE
VDHPIRGKYL IVGNPIKMSD SPTEVTRSPL LGEHTDEILH ELGYSTDEMR
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