Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1204 |
Symbol | |
ID | 6183974 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 1042010 |
End bp | 1044277 |
Gene Length | 2268 bp |
Protein Length | 755 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641671787 |
Product | Lysine decarboxylase |
Protein accession | YP_001797963 |
Protein GI | 171463850 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000000345453 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 0.552697 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTTC GTTTCCCAAT CATCATTATT GATGAAGACT TCCGCTCCGA AAATATTTCG GGCTCGGGAA TTCGTGACCT CGCCGAGGCG ATAGAGAATG AAGGTGTGGA GGTTATTGGC TTAACTAGCT ATGGCGACCT TACTTCTTTT GCCCAACAGG CTTCTCGCGC ATCTACTTTC ATTGTTTCGA TTGACGACGA AGAATTCGAT TCTGATTCTG AAGATCATGA TCTTCCTGCT TTAAATAATT TGCGTGCTTT TATTACTGAA GTTCGTAAGC GTAATGAAGA TATTCCAATC TTCTTGTACG GCGAGACACG CACATCACGT CATATGCCAA ATGACATCTT GCGTGAGCTG CATGGTTTCA TTCATATGAA TGAAGACACT CCGGAGTTTG TAGCGCGTCA CATCATTCGT GAAGCAAAAG TGTATTTAGA CTCTCTAGCA CCACCATTCT TCCGCGCATT AACCAATTAC GCCTCAGAAG GCTCTTATTC ATGGCACTGC CCTGGTCACT CTGGTGGTGT TGCCTTCCTA AAGAGCCCAG TGGGCCGTAT GTTCCACCAG TTCTTTGGTG AAAACATGCT TCGTGCCGAC GTATGTAATG CTGTTGAAGA GCTGGGTCAG CTCTTAGATC ACACTGGCCC AGTGTTGCAG AGTGAGCGCA ATGCTGCGCG CATCTTTAAT GCCGACCATT TGTTCTTTGT AACCAATGGT ACCTCTACGT CTAATAAGAT TGTTTGGCAC TCCACCGTTG CTCCTGGCGA CGTTGTATTG GTAGACCGTA ACTGTCATAA GTCTGTGATT CATTCCATCA CGATGATGGG GGCGATTCCA ATTTTCTTGA TGCCTACCCG TAATCACTTG GGCATTATTG GTCCAATTCC AAAGGAAGAG TTTGAATGGA AAAACATTAA GAAGAAAATT GATGTCAATC CGTTTATTAA AGATAAGAAT GTTGTGCCAC GCGTCATGAC TTTGACTCAA AGCACTTATG ACGGTATTGT TTACAACGTC GAGATGATCA AAGAGATGCT CGATGGTAAA GTGGACTCAC TTCACTTTGA TGAGGCTTGG TTGCCCCATG CTGCTTTCCA TCCTTTCTAT AAGGATATGC ACGCCATTGG CTCAGATCGC AAGCGCACCA AGAAGAGCTT GATGTTTGCA ACACAATCTA CACATAAGTT ATTGGCTGGT CTATCTCAAG CTTCACAGGT ATTGGTGCAG GATGCTGAAG ATGCCAAACT AGACCGTGAC TGCTTCAATG AAGCTTATTT GATGCACACC TCAACGAGTC CTCAGTATGC AATTATTGCC TCCTGCGATG TGTCTGCTGC GATGATGGAA TCTCCCGGCG GCACCACTCT AGTTGAGGAA TCGATTGCCG AAGCAATGGA CTTCCGCCGT GCGATGCGTG AAGTAGATGA TAAGTTTGGC GCCGATTGGT GGTTCAAGGT TTGGGGTCCA GATCACTTGG CTGAAGAGGG CATTGGTGAG CGTTCGGACT GGGTCTTGGA GCCTTCCGCT CCTTGGCATG ATTTTGGTAA GTTGGCCAAA GATTTCAATA TGCTTGATCC CATTAAGGCG ACCGTAGTTA CGCCTGGCTT AGATATTGAA GGCAACTTTG GTTCTATGGG TATTTCGGCC AGCATTGTTA CTAAGTACCT TGCTGAGCAT GGCGTGATCG TAGAGAAGTG CGGCTTGTAC TCATTCTTCA TCATGTTTAC TATCGGCATT ACTAAGGGCC GTTGGAACAC GCTCGTAACA GAGCTACAAC AATTTAAAGA TCACTTTGAT AAAAATGCAC CTTTGTGGAA AGTGTTGCCT GAGTTTGTGG CCAAACATCC ACGCTATGAA CGCGTTGGTT TAAAGGATAT CTGTCAGCAA ATTCATGAGT TCTACAAGAG TCGTGACGTA GCCCGCATGA CTACCGAGAT GTATACCTCC GATATGATTC CCGCCATGAT GCCTTCTGAG GCGTGGGCGA AGATGGCTCA CAAACAGGTA GACCGTGTGC CACTAGATCG ACTAGAAGGA CGCGTTACTG CGATGTTGGT TACACCATAC CCCCCAGGCA TTCCGCTACT CATACCGGGT GAGCGCTTTA ATAAGCGTAT TATTGACTAT CTCTACTTCG CTAGAGACTT CAATGAGAAG TTCCCTGGGT TTGAGACGGA TATTCATGGA CTCGTTAAGA CTAGTGTTGA TGGGAAGAGT GAATACTACG TTGACTGTGT TAGACAAGAG CGTGACATTA CTCTGTGA
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Protein sequence | MKFRFPIIII DEDFRSENIS GSGIRDLAEA IENEGVEVIG LTSYGDLTSF AQQASRASTF IVSIDDEEFD SDSEDHDLPA LNNLRAFITE VRKRNEDIPI FLYGETRTSR HMPNDILREL HGFIHMNEDT PEFVARHIIR EAKVYLDSLA PPFFRALTNY ASEGSYSWHC PGHSGGVAFL KSPVGRMFHQ FFGENMLRAD VCNAVEELGQ LLDHTGPVLQ SERNAARIFN ADHLFFVTNG TSTSNKIVWH STVAPGDVVL VDRNCHKSVI HSITMMGAIP IFLMPTRNHL GIIGPIPKEE FEWKNIKKKI DVNPFIKDKN VVPRVMTLTQ STYDGIVYNV EMIKEMLDGK VDSLHFDEAW LPHAAFHPFY KDMHAIGSDR KRTKKSLMFA TQSTHKLLAG LSQASQVLVQ DAEDAKLDRD CFNEAYLMHT STSPQYAIIA SCDVSAAMME SPGGTTLVEE SIAEAMDFRR AMREVDDKFG ADWWFKVWGP DHLAEEGIGE RSDWVLEPSA PWHDFGKLAK DFNMLDPIKA TVVTPGLDIE GNFGSMGISA SIVTKYLAEH GVIVEKCGLY SFFIMFTIGI TKGRWNTLVT ELQQFKDHFD KNAPLWKVLP EFVAKHPRYE RVGLKDICQQ IHEFYKSRDV ARMTTEMYTS DMIPAMMPSE AWAKMAHKQV DRVPLDRLEG RVTAMLVTPY PPGIPLLIPG ERFNKRIIDY LYFARDFNEK FPGFETDIHG LVKTSVDGKS EYYVDCVRQE RDITL
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