| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1197 |
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| Symbol | |
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| ID | 6183863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1034569 |
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| End bp | 1036017 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671780 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_001797956 |
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| Protein GI | 171463843 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 0.174751 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTTT CTAAAGAAAA TAAACGCGAG TCGTATGACT CAAAGAGCTC TGGAAATGAA
TTCCAGAATT TTGCCTTAGC AGCATCACTC CTTAAAAATG TTGCTGAACT GGGTTTTACC
CAAGCTACTG CAGTGCAAGC TCAGGTTATT CCTGCGGCTT TAGCTGGCAG TGACTTATTG
GTCAACAGTC AAACTGGTAG CGGCAAAACT GCAGCCTTTT TATTGCCTTT AATTAATCAA
CTTATCGAAG ACAACCCGAA CAACTCACCT GTACCAAGTC GCGCACAACC TAAAGTGTTA
GTGCTCTGCC CAACTCGTGA ATTAGCTCAA CAGGTCGCCG CTGATGCAGT GAATTTAGTT
CGTGGCATGA AAGGTATTCG CATTGCAACT GTTATGGGTG GCATGCCCTA TGGCAAGCAA
ATCCAGGCTT TAAAAGGTGC ATTGTTAGTT GTTGCAACTC CAGGCCGTTT GCTCGACTTA
TGCGATAGCA AAGCAATTCG CTTAGACGAC GTAAAACAAC TCGTTATCGA TGAAGCCGAT
CGCATGCTCG ACATGGGATT TGCTGATGAT CTTGAAGCTA TTGATAAGCG TTGCGCAGGC
CGTAACCAAA CTTTGATGTT CTCTGCAACT TTTGCGCCAA AGATTATGTC TTTAGCAAAT
GAGTTGACTA CAAATGCAAA GCGTATTGAA CTTGCTCACG CAGGCGAAAA GCACGCCAAC
ATTGAACAGA AGTTGCATTG GGCTGACAGC ATGTCACACA AGCATAAGCT GCTTGAGCAT
ATTTTGGCCG ATGCCGATTT GGATCAAGCG GTTGTATTTG CCAGCACTCA AGTTGAAAGC
GAAAAAATTG CTGACACATT ACGTGCCAAT GGCTACGAAG CTACTGCCCT TCACGGTGCA
ATGCCTCAGG CCGTACGTAT GCGCCGTCTC GAGTCTTTGC GTAAAGGTCG TACCAAGATT
TTGGTTGCAA CTGACGTAGC GGCTCGCGGT ATTGATGTGC CACGTATTAG TCACGTGATT
AACTTTGGCT TACCAATGAA ACCTGAAGAC TATACGCACC GCATCGGTCG TACTGGTCGC
GCAGGTCGCA ATGGCGTTGC TATCACTTTG GTCGAACATC GTGATCGCGC CAAGATCCGT
AATATCGAAC GCTTCACACA GCAAGATATT GTTGCTTCAG TTATCGCTGG TCTTGAGCCA
CAAGCCAAGC TAAGCTTTGG TGGTGGCGGT GGTCGTCCTG GTGGCAATCG CTCTGGTGGT
GGCGGTCATT ACGGCTCTGA CGCCCGTTCA GAATCTCGCT TTGGGGGTGG AGGTCGTTCA
GGCGACTCAC GTCCTGCGCG TTCTGCTGAC TCACGTCCAA CACGCTCTGG CGATTCACGC
CCAGCAGGTG GTCCGCGTTT TGCGAAACCA AAGTCTGGCG GTCAACGTCG CAACTTTAGC
GGTAACTAA
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| Protein sequence | MTFSKENKRE SYDSKSSGNE FQNFALAASL LKNVAELGFT QATAVQAQVI PAALAGSDLL
VNSQTGSGKT AAFLLPLINQ LIEDNPNNSP VPSRAQPKVL VLCPTRELAQ QVAADAVNLV
RGMKGIRIAT VMGGMPYGKQ IQALKGALLV VATPGRLLDL CDSKAIRLDD VKQLVIDEAD
RMLDMGFADD LEAIDKRCAG RNQTLMFSAT FAPKIMSLAN ELTTNAKRIE LAHAGEKHAN
IEQKLHWADS MSHKHKLLEH ILADADLDQA VVFASTQVES EKIADTLRAN GYEATALHGA
MPQAVRMRRL ESLRKGRTKI LVATDVAARG IDVPRISHVI NFGLPMKPED YTHRIGRTGR
AGRNGVAITL VEHRDRAKIR NIERFTQQDI VASVIAGLEP QAKLSFGGGG GRPGGNRSGG
GGHYGSDARS ESRFGGGGRS GDSRPARSAD SRPTRSGDSR PAGGPRFAKP KSGGQRRNFS
GN
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