| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1170 |
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| Symbol | |
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| ID | 6183375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1014702 |
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| End bp | 1016393 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641671764 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_001797940 |
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| Protein GI | 171463827 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 0.385024 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCC TAAATGAACG CTCGCGCATG GTCACAGAAG GGGTCGCACG CGCACCTAAT
CGTTCGATGT ATTACGCAAT AGGTTACGAA GAAAAGGATT TCGTAAAGCC AATGGTTGGC
GTTGCGAATG GTCACTCCAC TATCACCCCT TGTAATAGTG GTTTACAAAA ATTAGCCGAT
GCTGCAGTTT CTGCGCTTGA AGGTGCTGGT GCAAAAGCAC AAATGTTTGG CACCCCAACC
GTTTCCGATG GCATAGGCAT GGGCACAGAA GGCATGAAGT ATTCACTCGT GTCACGCGAA
GTGATTGCTG ACAGTATTGA AACTTGTGTA AATGGACTGT GGCAAGACGG TGTAGTTGTG
ATTGGCGGCT GCGATAAAAA TATGCCAGGC GGCATGATGG CTTTAGCTCG CACCAATGTG
CCCGGCATCT ATGTATATGG CGGCACAATT AAGCCAGGCC ACTACAAAGG TAAAGACCTT
AATATCGTTT CAGCGTTTGA AGCAGTTGGT GAATTTACCT CCGGCAGACT CAGCGAAGAG
GATTTAAAAG GTGTAGAACA ACATGCCTGT CCGGGTAGCG GCTCCTGCGG TGGTATGTAT
ACCGCCAACA CAATGAGCTC GGCCTTTGAG GCCTTAGGCA TGAGCCTCCC CTACTCCTCA
ACGATGGCAA ACGAAGATGC AGAAAAAGTA GCAAGCACAC ATGATTCTGC TGTCGTATTG
GTTGAAGCGA TCAAAAAGAA CTTGCGTCCA CGCGACATCA TTACCAAGAA ATCGATTGAG
AACGCTGTTA GCGTAATCAT GGCTGTTGGT GGATCTACAA ATGCGGTGCT GCATTTCTTG
GCGATTACTA GCGCCGCTGA AATCGATTGG ACCATTGATG ATTTTGAACG CATTCGTAAG
CGCGTTCCTG TAATCGTGGA TATGAAACCA TCGGGCACCT ACCTTGCTAC CGATTTGCAT
CAAGCTGGCG GCATTCCTCA AGTGATGAAG ATTTTGCTCG ACGACGGATT GCTCCACGGC
GATTGCATGA CTATCACTGG CAAAACAGTT GCGGAAGTGT TGAAAGATGT TCCATCCGTA
CCGCGCGCCG ATCAGAAAGT GATCCGTACC TTAGATAATC CTTTGTATAA ACAAGGTCAC
TTGGCAATCT TGAAAGGCAA TATCTCACCA GAGGGTTGTG TGACCAAGAT AACCGGCCTC
AAAAATCCAT CGATCACCGG CCCAGCACGC GTCTTTGATT CTGAAGATGA TGCTATGGCA
GCCATCATGG CACAGAAGAT TAAAGATGGT GACATCGTGG TCATTCGCTA TGAAGGCCCT
AAAGGCGGCC CTGGTATGCG CGAAATGCTT GCCCCCACCT CTGCCCTAGT TGGTCAAGGT
TTAGGCGAAT CTGTGGGGCT TATTACCGAT GGCCGCTTCT CTGGTGGCAC TTGGGGCATG
GTCGTTGGCC ACGTGGCACC GGAAGCTTAT GTCGGTGGAA CCATCGCCCT CATTCATGAG
GGTGACTCTG TCACGATCGA TGCGCATAAG CTACTCATTC AGCTGAATGT AGATGATGCA
GAGATCGCTA AACGTCGCGC AGCCTGGAAG CAACCCAAGC CACGCTACAC CCGCGGCTTG
CTTGCAAAGT ATGCCAAACT TGCTAGCACC GCAAGCAAAG GGGCGGTGAC CGACTTAAAT
TTGAATGATT AG
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| Protein sequence | MKRLNERSRM VTEGVARAPN RSMYYAIGYE EKDFVKPMVG VANGHSTITP CNSGLQKLAD
AAVSALEGAG AKAQMFGTPT VSDGIGMGTE GMKYSLVSRE VIADSIETCV NGLWQDGVVV
IGGCDKNMPG GMMALARTNV PGIYVYGGTI KPGHYKGKDL NIVSAFEAVG EFTSGRLSEE
DLKGVEQHAC PGSGSCGGMY TANTMSSAFE ALGMSLPYSS TMANEDAEKV ASTHDSAVVL
VEAIKKNLRP RDIITKKSIE NAVSVIMAVG GSTNAVLHFL AITSAAEIDW TIDDFERIRK
RVPVIVDMKP SGTYLATDLH QAGGIPQVMK ILLDDGLLHG DCMTITGKTV AEVLKDVPSV
PRADQKVIRT LDNPLYKQGH LAILKGNISP EGCVTKITGL KNPSITGPAR VFDSEDDAMA
AIMAQKIKDG DIVVIRYEGP KGGPGMREML APTSALVGQG LGESVGLITD GRFSGGTWGM
VVGHVAPEAY VGGTIALIHE GDSVTIDAHK LLIQLNVDDA EIAKRRAAWK QPKPRYTRGL
LAKYAKLAST ASKGAVTDLN LND
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