| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1104 |
|---|
| Symbol | |
|---|
| ID | 6183353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 964548 |
|---|
| End bp | 966416 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671714 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_001797891 |
|---|
| Protein GI | 171463778 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 74 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACCC GAACACTTAT TCGCCAATTT GCCCATTTTT TGCTGCTAGC TCTGCTAGGG
GCGCTTGGGG CCAATACAAC TATGGCGGGG CAGGGAATTG CGCAATACGG CATACCGAAG
TATTCCGACG GATTTGCTCA TTTTGATTAC GTTAATCCGA ACGCTCCCCG TGGGGGAACC
TTGGTCTTGC CAAATCCAGG CCAAAGAACC AGTTTCGATA AATTCAATCC GTTTACTCTG
CGTGGCATTA CTGCTCCGGG CATTGATCTG ATGTTTGAAT CATTGGCTGA GGGTAGTGCT
GATGAGGTTT CGAGTATTTA CGGGTTATTG GCGGATGATA TTCAAGTAGC TAAAGATCGT
AAGTCGGTTA CTTTCCACAT CCGCCCAGAA GCAAAATTTT CTGATGGCAG TCCTGTTTTG
GCTACAGATG TTAAATATAG TTTTGACACT CTTATGAGTG GCAAGGCACA CCCTCGCTAT
AAGACTACTT TTGCTGATAT TAAAGAAGCG GTAGTTTTAT CGGATCAATC CATTCGCTTT
GATTTTAAGA ATGACAATGC GGAGCTGCCA ATTTTGGCTG GCACCTTTCC GGTCTTCTCG
CGCAACTGGG GTAAGCAGCC CGATGGATCA ATAATTCCAT TCGAAAAGCT TGCCTTTGAT
GCACCGCTTG CAAGTGGCCC TTATTTGATT GAGTCTTTTA AAGCGGGTAA GTCGATTGTT
TATAAAAAGA ACCTAAACTA TTGGGCTGAT CAACTGAGCA GGCCTCTGAA TGTGCGTGTC
GGTTTTTATA ACTTTGATCG TGTGTTGTAC AAGCTGTATA GCGATGATGC TGTTCGGTTG
GAAGCTTTTA AGGCTGGGGA GTTTGATGCT CTGGTGGAGT ATCGCGCCAA GATCTGGGCT
AAGGGCTATG TCGGATCTAA GTTTGATAAG GGCATCTTAT TAAAGAAGGC ATTCCTCAAT
CATAATGGCG CTGGCATGCA AGGTTTTGCC ATGAATGTAC GGCGCCCAAT ATTCAAAGAT
GCGCGTGTGC GTGAAGCTCT GGGATATGCG CTAGATTTTG AGTGGCTTAA TCGTCAAATA
TTCTTTGATC AATACAGTCG TATTAATAGC TATTTTACGA ATAGCGACTT AAGTGCTAAT
TTTGATGGCC CACACAAACC AACCGAAGGC GAGTTGAAAT TACTCAAGCC TTTAAAAGCA
AAATATCCTC AGTGGGTTCC AGATGCCGTT TTTGGTCCAA TGCCTGCAGC ACTTTCAACC
AAGCCACCTG GAAGTTTGCG CCAGAATTTA AAGAAAGCGC GCGAGCTCCT TATGCATGCA
GGTTGGCAAT ACCGTGATGG CGCATTGCGT AACGAAAAGG GCGAGCCATT TCGTTTTGAG
ATTGTGGAAG ATGGCGGTTT CTTTTTAAGG GTGATTTCTG CTTATGTGCG TAACTTAGAG
AAGTTAGGAG TGCAGGTTAA TATCCGCACT AGCGACTTTG CCCTGCATCA AAAGCGGATG
AATGAATACG ATTTTGATAT GACCACTGTT CGATTTCAGG ATTCTCAAAA TCCAGGCAAT
GAACTTTGGG ATCGCTTTGG CAGTCAAGCG GCCAAAGAAA AAGGCTCCGA TAACGTCATC
GGCGTACAAT CACCAGTCGT AGACGCCTTG ATCGAGGAAA TTACGAAGGC GCAAAATCGT
GAACAGTTAA GAGCCGCAAC TAGAGCGCTT GACCGTGTCT TATGGAATAG TTATTACGTT
GTACCCCAGT GGTACAACCC AACCCATCGC GTTGCCTTCC GCCACGAGAT GCGCTACCCA
GAGCCGCCTC TGTACTATTC GGCTGAGTTA TGGATTATGC AAAATTGGTG GAAAGAGGAG
GCTAAATAA
|
|---|
| Protein sequence | MPTRTLIRQF AHFLLLALLG ALGANTTMAG QGIAQYGIPK YSDGFAHFDY VNPNAPRGGT
LVLPNPGQRT SFDKFNPFTL RGITAPGIDL MFESLAEGSA DEVSSIYGLL ADDIQVAKDR
KSVTFHIRPE AKFSDGSPVL ATDVKYSFDT LMSGKAHPRY KTTFADIKEA VVLSDQSIRF
DFKNDNAELP ILAGTFPVFS RNWGKQPDGS IIPFEKLAFD APLASGPYLI ESFKAGKSIV
YKKNLNYWAD QLSRPLNVRV GFYNFDRVLY KLYSDDAVRL EAFKAGEFDA LVEYRAKIWA
KGYVGSKFDK GILLKKAFLN HNGAGMQGFA MNVRRPIFKD ARVREALGYA LDFEWLNRQI
FFDQYSRINS YFTNSDLSAN FDGPHKPTEG ELKLLKPLKA KYPQWVPDAV FGPMPAALST
KPPGSLRQNL KKARELLMHA GWQYRDGALR NEKGEPFRFE IVEDGGFFLR VISAYVRNLE
KLGVQVNIRT SDFALHQKRM NEYDFDMTTV RFQDSQNPGN ELWDRFGSQA AKEKGSDNVI
GVQSPVVDAL IEEITKAQNR EQLRAATRAL DRVLWNSYYV VPQWYNPTHR VAFRHEMRYP
EPPLYYSAEL WIMQNWWKEE AK
|
|---|
| |