| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1096 |
|---|
| Symbol | |
|---|
| ID | 6183123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 956545 |
|---|
| End bp | 957798 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641671706 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001797883 |
|---|
| Protein GI | 171463770 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATC CCATCAAACA GGTGCTGAGC GTCGCGCTCA ACGTGCTCAA CGTTCACGTT
GATGATGCCG ATGATGAAGA CACGATGAAG TTGCACAAAG TATTGGCTGA CGTTGGCATG
GGTTCGCGTC GCGATATGGA AGATTTGATT ATTCAGGGAC GCGTTTCCGT AAATGGATTA
CCCGCTCATA TCGGCCAAAG CATTGGGCCA ACAGATCAAG TGCGCATCAA CGGCAAGCCA
GTACATCGCA AGATTCAGAC CAAGCCGCCA CGCGTCATCA TGTATCACAA GCCTGCTGGT
GAAATCGTCA GCCAGTCAGA TCCAGAGGGT CGTCCAACTG TATTTGATCG TTTGCCAAAA
CCACGTCAAG GCCGCTGGAT TGCAGTAGGT CGCTTGGATT TTAATACCGA AGGTTTATTG
CTGTTCACCA CTTCTGGTGA ATTGGCGAAT CGCTTAATGC ATCCACGTTA TGGCGTCGAG
CGTGAATACG CTGTACGCAT CTTGGGTGAC TTGAGTCAGG AAAACACAGT ACTATTAAAG
AGTGGTATTA CGCTTGATGA TGGCCAAGCA AAATTCTTAC GCCTAGCAAT AGGTGGTGGT
GAAGGTGCAA ACCGTTGGTA CCACGTTGCA TTAAGTGAAG GTCGTAATCG CGAAGTGCGC
CGCATGTTTG AGGCGGTTGG TCATACAGTA TCTCGCTTAA TTCGAACTCG TTATGGCATT
TTCTTATTGC CCCCACGTTT AAGACGAGGC AAATGGGAAG AGATTGAGGC TGGTGATATC
TATAACTTGA TGAAGTCTGC TGGCTTAAAA ATGCCGCAAC CGCAAGATAA AGGTCGCAAC
CCTAACTCTA ATTCCAACGG TCGTGATCGT CGCCCTATAG GGGAAGATTT TCAACCAGAT
CCAATGCAAA CCTCGGTTTC TTATTGGGGT TCCCGCGATG CCTTGACCCT TGCTGGCGGC
CATAACGGCA TGACTCATCA GGGTAGAGGT GGAAAACCTG GGGGTGGTGG AGGTTCTGGT
GAAGGTCGCG GACCATTCCG TGGCCGCACC AAAGGTGGCA GACCAGGTCA GGGCGGCCAA
GGTGGCCAGG GTCAAAATCG CAGTAAAGCT GCCAAAGTTC ACCATGGTCA GTCTGCTTTT
GTGACCGGAA ACCCGCAAAC GCCCGGAAAT GGACCCAAAA GAGGTGCACC AAAGGGGCGC
AAATCCTTCA ATAAAGGACC TAGAAAACCG CGAAATCCGG GCGAAAGCTT CTGA
|
|---|
| Protein sequence | MKYPIKQVLS VALNVLNVHV DDADDEDTMK LHKVLADVGM GSRRDMEDLI IQGRVSVNGL
PAHIGQSIGP TDQVRINGKP VHRKIQTKPP RVIMYHKPAG EIVSQSDPEG RPTVFDRLPK
PRQGRWIAVG RLDFNTEGLL LFTTSGELAN RLMHPRYGVE REYAVRILGD LSQENTVLLK
SGITLDDGQA KFLRLAIGGG EGANRWYHVA LSEGRNREVR RMFEAVGHTV SRLIRTRYGI
FLLPPRLRRG KWEEIEAGDI YNLMKSAGLK MPQPQDKGRN PNSNSNGRDR RPIGEDFQPD
PMQTSVSYWG SRDALTLAGG HNGMTHQGRG GKPGGGGGSG EGRGPFRGRT KGGRPGQGGQ
GGQGQNRSKA AKVHHGQSAF VTGNPQTPGN GPKRGAPKGR KSFNKGPRKP RNPGESF
|
|---|
| |