| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1086 |
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| Symbol | |
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| ID | 6183735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 941837 |
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| End bp | 943600 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671697 |
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| Product | dihydrolipoamide dehydrogenase |
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| Protein accession | YP_001797874 |
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| Protein GI | 171463761 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0812203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 0.813461 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAGC AAACAATCCT CGTTCCGGAT ATTGGCGACT ATTCCGATGT ACCAGTTATT
GAAGTGCTGG TTAAGGTTGG TGATGCTATT GAAAAAGAAC AACCTTTATT AGTTCTCGAA
TCTGATAAAG CAACTATGGA AGTACCGGCT GATGCAGTAG GCACTGTAAC TAGCGTTGCA
GTTAAGCTTG GTGATAAGGT CAGCAAAGGC TCTGTGATTG CAGAGATTGA AGCGAGTACT
ACTGTACCAG CTGCTAAACC TGCCGCCGCA CCAGTCGCTA CAGCAACGGC AACGGCACCC
GTTGCAGGGC AGTACAGCGG CAAGGTTGAC CATGAGTGCG AAGTGTTGGT TTTGGGCGCT
GGCCCTGGTG GCTACAGTGC AGCGTTTCGT AGCGCAGACT TAGGTATGAA TACAGTTTTA
GTGGAGCGAT ACCCAACCTT AGGCGGCGTC TGCTTAAATG TAGGCTGTAT TCCATCTAAG
GCATTGCTGC ATACAACCTC CGTCATGGAT GAGGTTAAGA GTATGGCGAA GCACGGCATT
ACTTTTGGCG CGCCAAAAAT TGAGATTGAT CAATTGCGTG GTTATAAAGA ATCCGTAATT
ACTAAATTAA CTGGTGGTCT TGCTGGAATG GCAAAGGCTC GCAAAGTAAA GGTAGTGCGA
GGCCTGGGCA AATTCTTGGA TGCAAACCAT GTTGAGGTTG AATTAACTAA TGGCACTGGC
CAGGATCTCA CCGGTCAAAA AGAAGTGGTG CGCTTTCAGA AGGCCATCAT TGCTGCTGGG
AGTCAGCCAG TGAAATTGCC CTTCTTGCCA GATGATCCGC GCATTGTGGA CAGTACTGGC
GCTTTGTTGC TTAAGAGTAT TCCAAAGCGG ATGCTGGTGA TTGGCGGCGG CATTATTGGC
TTAGAGATGG CAACTGTTTA CAGCACATTA GGCTCACGCA TTAATATTGC AGAGATGATG
GATGGCCTCA TGGCTGGCGC CGATCGTGAT TTAGAAAAAG TCTGGGAGCA GTTCAATGCC
GGACGTTTTG AAAAAATCAT GCTCAAAACT CGCGCTGCTA AAGCAGAGGT TAAGTCAGAT
GGCATACAAG TAAGCTTTGA GGGTGAAAAT GCTCCATCTG AACCTCAAAC CTACGATTTG
GTTTTGGTTG CCGTAGGTCG TACCCCGAAT GGTAAAAAGA TTGATGCTGG TAAAGCGGGT
GTGCAGGTTG ATGAGCGTGG TTTTATTCCA GTCGATAAGC AAATGCGTAC CAATGTTTCC
AATATTTTTG CGATTGGTGA CCTTGTTGGT CAGCCGATGT TGGCGCATAA AGCTGTGCAT
GAAGGTCATG TAGCTGCTGA AGCCGCTGTC GGTGAAAAAT CCTACTTTGA CGCGAAGCAA
ATTCCATCGG TTGCTTATAC CGATCCTGAG GTAGCTTGGG CGGGTTTAAC TGAAGAGCAG
TGCAAAGCGC AAGGCATCGC CTATGAAAAA GGTTTGTTTC CATGGGCGGC GAGTGGACGC
GCGATTGCTA ACGGTAGAGA TGAGGGTTTT ACAAAACTCA TTTTTGATGC AGCTACCCAT
TGCATTATTG GTGGTGGTAT TGTGGGTACA CATGCAGGCG ATTTGATTGG CGAAGTGTGT
CTGGCAATTG AGATGGGAGC TGACGCGGTT GATATTGGTA AGACAATTCA TCCACATCCA
ACATTGGGTG AGTTAGTGGG TCTTGCAGCT GAAGCCGCTC ATGGTCATTG CACTGATTTG
CCGCCTGTCA AAAAGAAGTC GTAA
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| Protein sequence | MAKQTILVPD IGDYSDVPVI EVLVKVGDAI EKEQPLLVLE SDKATMEVPA DAVGTVTSVA
VKLGDKVSKG SVIAEIEAST TVPAAKPAAA PVATATATAP VAGQYSGKVD HECEVLVLGA
GPGGYSAAFR SADLGMNTVL VERYPTLGGV CLNVGCIPSK ALLHTTSVMD EVKSMAKHGI
TFGAPKIEID QLRGYKESVI TKLTGGLAGM AKARKVKVVR GLGKFLDANH VEVELTNGTG
QDLTGQKEVV RFQKAIIAAG SQPVKLPFLP DDPRIVDSTG ALLLKSIPKR MLVIGGGIIG
LEMATVYSTL GSRINIAEMM DGLMAGADRD LEKVWEQFNA GRFEKIMLKT RAAKAEVKSD
GIQVSFEGEN APSEPQTYDL VLVAVGRTPN GKKIDAGKAG VQVDERGFIP VDKQMRTNVS
NIFAIGDLVG QPMLAHKAVH EGHVAAEAAV GEKSYFDAKQ IPSVAYTDPE VAWAGLTEEQ
CKAQGIAYEK GLFPWAASGR AIANGRDEGF TKLIFDAATH CIIGGGIVGT HAGDLIGEVC
LAIEMGADAV DIGKTIHPHP TLGELVGLAA EAAHGHCTDL PPVKKKS
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