Gene Pnec_1081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1081 
Symbol 
ID6183776 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp938132 
End bp938911 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content50% 
IMG OID641671692 
Producttranscriptional regulator, IclR family 
Protein accessionYP_001797869 
Protein GI171463756 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.199562 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.251697 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACTA GCAAAACCAT CAAAACTCCT AAATCTACCG GCGAAGTAGG TAAAACAGCC 
ATCCAAGTAG TAGAGCGCAT GATGAATTTG TTAGACGCAC TGGCTGAACA AGAGGAATCT
AGCAGTCTAA AGAATCTCGC TGAGATAACC GGCCTGCACC CTTCTACCGC CCACCGCATT
TTGAATGACA TGGTTACTTG CCGACTGGTT GAGCGTGGTG ATGGTGGCAC TTACCGTCTT
GGCCTAAAAC TCTTAGAGCT TGGTAATTTA GTTAAAGCAA GGTTATCTGT GCGTGAGGCC
GCGCAATTGC CGATGCGCAC CCTACATAAG CTCACTGGTG AAACCGTGAA TTTATCGGTT
CATCAAGGCG ATGAAATTGT CTACATTGAT CGCGCCTATA GCGAACTATC TGGAATGCAA
GTTGTCCGCG CCATTGGTGG TCGTGCTCCT TTGCATCTCA CCTCGGTTGG CAAACTCTTT
TTAGCCAGCG ATGATCCTAG CCAAGTTCGC GCCTATGTCA CTCGCACCGG CTTATCTGGG
CATACTCGCA ATAGTATTAC TGACTCCGGA AAACTCGAAA TCGAACTCAA TCAAGTTCGG
AAAGTGGGGA GCGCTCGTGA CGATGAAGAG CTTGAGTTAG GCGTGAGCTG TTTAGCTGCC
GCCATTTTGG ATGACACCGG AAAACTGGTT GCTGGCCGCC CCAGCCGACC GTATTCAGGC
GGATTGGCTG CGTGCCCTTC AAAAAACTGC GCTTCAGATC TCCAAGGGAA TGGGCTTTAA
 
Protein sequence
MSTSKTIKTP KSTGEVGKTA IQVVERMMNL LDALAEQEES SSLKNLAEIT GLHPSTAHRI 
LNDMVTCRLV ERGDGGTYRL GLKLLELGNL VKARLSVREA AQLPMRTLHK LTGETVNLSV
HQGDEIVYID RAYSELSGMQ VVRAIGGRAP LHLTSVGKLF LASDDPSQVR AYVTRTGLSG
HTRNSITDSG KLEIELNQVR KVGSARDDEE LELGVSCLAA AILDDTGKLV AGRPSRPYSG
GLAACPSKNC ASDLQGNGL