Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1081 |
Symbol | |
ID | 6183776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 938132 |
End bp | 938911 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641671692 |
Product | transcriptional regulator, IclR family |
Protein accession | YP_001797869 |
Protein GI | 171463756 |
COG category | [K] Transcription |
COG ID | [COG1414] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.199562 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 0.251697 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACTA GCAAAACCAT CAAAACTCCT AAATCTACCG GCGAAGTAGG TAAAACAGCC ATCCAAGTAG TAGAGCGCAT GATGAATTTG TTAGACGCAC TGGCTGAACA AGAGGAATCT AGCAGTCTAA AGAATCTCGC TGAGATAACC GGCCTGCACC CTTCTACCGC CCACCGCATT TTGAATGACA TGGTTACTTG CCGACTGGTT GAGCGTGGTG ATGGTGGCAC TTACCGTCTT GGCCTAAAAC TCTTAGAGCT TGGTAATTTA GTTAAAGCAA GGTTATCTGT GCGTGAGGCC GCGCAATTGC CGATGCGCAC CCTACATAAG CTCACTGGTG AAACCGTGAA TTTATCGGTT CATCAAGGCG ATGAAATTGT CTACATTGAT CGCGCCTATA GCGAACTATC TGGAATGCAA GTTGTCCGCG CCATTGGTGG TCGTGCTCCT TTGCATCTCA CCTCGGTTGG CAAACTCTTT TTAGCCAGCG ATGATCCTAG CCAAGTTCGC GCCTATGTCA CTCGCACCGG CTTATCTGGG CATACTCGCA ATAGTATTAC TGACTCCGGA AAACTCGAAA TCGAACTCAA TCAAGTTCGG AAAGTGGGGA GCGCTCGTGA CGATGAAGAG CTTGAGTTAG GCGTGAGCTG TTTAGCTGCC GCCATTTTGG ATGACACCGG AAAACTGGTT GCTGGCCGCC CCAGCCGACC GTATTCAGGC GGATTGGCTG CGTGCCCTTC AAAAAACTGC GCTTCAGATC TCCAAGGGAA TGGGCTTTAA
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Protein sequence | MSTSKTIKTP KSTGEVGKTA IQVVERMMNL LDALAEQEES SSLKNLAEIT GLHPSTAHRI LNDMVTCRLV ERGDGGTYRL GLKLLELGNL VKARLSVREA AQLPMRTLHK LTGETVNLSV HQGDEIVYID RAYSELSGMQ VVRAIGGRAP LHLTSVGKLF LASDDPSQVR AYVTRTGLSG HTRNSITDSG KLEIELNQVR KVGSARDDEE LELGVSCLAA AILDDTGKLV AGRPSRPYSG GLAACPSKNC ASDLQGNGL
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