Gene Pnec_1073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1073 
Symbol 
ID6183576 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp932478 
End bp933053 
Gene Length576 bp 
Protein Length191 aa 
Translation table11 
GC content44% 
IMG OID641671685 
Productpeptidyl-prolyl cis-trans isomerase cyclophilin type 
Protein accessionYP_001797862 
Protein GI171463749 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.626374 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value0.148013 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAAGC TATTAGCCAC CCTCTTTGTT ACCGCCTCCT GCTTTATCGC TCAAGCAGCA 
TTTGCGGAAC CGAAGGTGGA ATTTAAAACA ACCATGGGTA ATTTCGTGGT GGAGCTAGAT
GACGTTAAAG CGCCAAAGAC AACTGCCAAC TTTTTGAATT ACGTAAAAAG TGGTTTTTAT
AACGGCACCG TCTTTCATCG TGTGATTGAT GGCTTCATGA TTCAAGGTGG CGGCTTTACC
GCAGACTTAA ATCAGAAACC AACCAATGCA CCAGTAGTTT CTGAAGCACA AAACGGCTTA
AAAAATAACG CTTATACGAT TGCGATGGCC CGTACATCTG ATCCAGATTC AGCTACCTCA
CAGTTTTTTA TTAACGTCAA AGACAATGCC GCATTGGACT ACCCTAATGC AATGGGTAAC
GGTTACACCG TTTTTGGCAA GGTGATTTCT GGAACCCAAA CCATCGATGC AATTCGAAAG
GTACCAACTA TGATTGCACC TGCACCACGT ATGGGCAGAA TGGCTGACGT CCCAAGTCAG
ACCGTCACTA TCGAATCAGC AACTATTCTG AAGTAA
 
Protein sequence
MRKLLATLFV TASCFIAQAA FAEPKVEFKT TMGNFVVELD DVKAPKTTAN FLNYVKSGFY 
NGTVFHRVID GFMIQGGGFT ADLNQKPTNA PVVSEAQNGL KNNAYTIAMA RTSDPDSATS
QFFINVKDNA ALDYPNAMGN GYTVFGKVIS GTQTIDAIRK VPTMIAPAPR MGRMADVPSQ
TVTIESATIL K