Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1061 |
Symbol | |
ID | 6183334 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 923162 |
End bp | 924940 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641671673 |
Product | succinate dehydrogenase, flavoprotein subunit |
Protein accession | YP_001797850 |
Protein GI | 171463737 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.760541 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 0.0367901 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCAA TTAAAAAATC ATTGCCACGC CGCCGTTTTG ATGCGGTGAT TGTTGGAGCT GGTGGCTCGG GTATGCGTGC ATCATTGCAG TTGGCTGAAG CTGGCTTGAA TGTTGCCGTT CTTACAAAAG TATTTCCAAC ACGTTCACAT ACTGTTGCCG CACAAGGTGG TATCGGTGCT TCATTGGGCA ATATGAGTGA AGATAATTGG CACTATCACT TCTATGACAC CATTAAGGGT TCTGACTGGT TGGGTGACCA AGACGTGATC GAATTTATGT GTCGCGAAGC TCCTAAAGCA GTTTATGAGT TAGAGCATTT CGGAATGCCG TTTGACCGTA ACCCGGATGG TACGATTTAT CAGCGTCCAT TCGGTGGTCA CACAGCAAAC TACGGCGAAA AGCCAGTGCA ACGTGCTTGC GCGGCAGCTG ACCGTACCGG TCATGCAATG TTGCACACTT TGTATCAACG TAACGTGCGT GCCAAAACCA ATTTCTTTGT CGAGTGGTTG GCGCTTGACT TGATCCGTGA TGATGCTGGT GATGTAGTTG GTGTTACCGC TCTCGAAATG GAAACGGGTC AGGTATACAT TCTTGAGGCC AAAGTAATTC TCTTGGCAAC CGGCGGTGCT GGCCGTATTT GGGACGCATC AACAAACGCA TTTATTAATA CCGGCGACGG TATGGGCTTA GCTGCTCGCG CAAGCATTCC ATTGGAAGAC ATGGAGTTCT GGCAATTTCA CCCAACTGGC GTAGCCGGAG CGGGCGCGTT ATTAACAGAA GGTTGCCGCG GTGAAGGTGG CATCTTGCGT AACAAAGATG GCGAGCGTTT CATGGAGCGT TATGCACCAA CATTGAAAGA TTTGGCTCCA CGCGATTTCG TATCTCGCTC AATGGACCAA GAAATTAAAG AAGGACGCGG TTGCGGTCCT AATGGCGACT ATGTTGTGCT CGATTTAACA CACATTGGTG CTGATACCAT CATGAAGCGT CTGCCTTCTG TGTATGAGAT TGGCATCAAC TTTGCTAATG TTGACGTTAC TAAAGAGCCA ATCCCAGTTG TCCCAACGAT TCACTATCAG ATGGGCGGTA TTCCTACCAA CATCAATGGT CAGGTTGTTG TGCCGGCAAA CGGTATTCAC AATGAAGTTA TCAATGGTTT ATATGCGATC GGTGAGTGTT CATGTATTTC TGTTCACGGT GCAAACCGTT TAGGCACTAA CTCATTGCTC GACTTGTTGG TGTTCGGTCG TGCGGCAGGC AACCACATCG TTGGTCTTGA TCTTAAGAAT CGCGAATTCA AGCCATTGCC TGCAAATGCA GGCGAACAAA CATTGGCATG TATTGCTGCG CTCGATAACT CCACTTCTGG TGAGTACGCG CAAGATGTGG CAAACGACAT TCGCAAGTGC ATGCAGAAAT ATGCTGGCGT GTTCCGCAAT CAAGAGTTGA TGGATGAAGG TGTTCGTCAA ATGGCTAAAT TGACCGAGCG CGCCAAGCAC TTATGGGTTA AAGACAAATC CGAGATTTTC AATACGGCAC GTATTGAAGC TTTGGAAGTG GCTAACTTGG TTGAGACTGC AAACGCAACA ATGACTTCTG CTGCAGCTCG CAAAGAAAGT CGTGGCGCTC ATTCGCATGA TGATCACCCA CATCGTGATG ATGAAAACTG GATGAAACAT ACTCTTTGGT ATAGCGAAGG CAATCGTTTG GACTACAAGC CAGTCCAATT GAAACCATTG ACTGTTGATT CAGTTCCTCC AAAAGAACGT ACTTTCTAA
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Protein sequence | MTAIKKSLPR RRFDAVIVGA GGSGMRASLQ LAEAGLNVAV LTKVFPTRSH TVAAQGGIGA SLGNMSEDNW HYHFYDTIKG SDWLGDQDVI EFMCREAPKA VYELEHFGMP FDRNPDGTIY QRPFGGHTAN YGEKPVQRAC AAADRTGHAM LHTLYQRNVR AKTNFFVEWL ALDLIRDDAG DVVGVTALEM ETGQVYILEA KVILLATGGA GRIWDASTNA FINTGDGMGL AARASIPLED MEFWQFHPTG VAGAGALLTE GCRGEGGILR NKDGERFMER YAPTLKDLAP RDFVSRSMDQ EIKEGRGCGP NGDYVVLDLT HIGADTIMKR LPSVYEIGIN FANVDVTKEP IPVVPTIHYQ MGGIPTNING QVVVPANGIH NEVINGLYAI GECSCISVHG ANRLGTNSLL DLLVFGRAAG NHIVGLDLKN REFKPLPANA GEQTLACIAA LDNSTSGEYA QDVANDIRKC MQKYAGVFRN QELMDEGVRQ MAKLTERAKH LWVKDKSEIF NTARIEALEV ANLVETANAT MTSAAARKES RGAHSHDDHP HRDDENWMKH TLWYSEGNRL DYKPVQLKPL TVDSVPPKER TF
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