| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1052 |
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| Symbol | |
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| ID | 6183431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 914717 |
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| End bp | 916135 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671664 |
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| Product | Tfp pilus assembly protein FimV-like protein |
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| Protein accession | YP_001797841 |
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| Protein GI | 171463728 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 0.295894 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTACGTA TTAGCCAGCT AGGGTTATTA AGGCTTTTTT GCTTAGTTTT GCTTAGCTGG
TCATCTTTAG CTAGTGCCAT CACTCTGGGT GCCCCACAGT TACAGTCTCG CCCTGGTGAG
CCATTACGAG TTGAAATTCC TATCCGGGTT GGTGCTGATG AGCAGGGTGC ATTATCCAGT
TTGAACGTAG CGATGCCCAA CAAAGCGGCA TATGAGCGTT TGGGGATCTC TCAAAAAATA
TTGCCTTTAA ATCCTCAGGC AATGGTGTAT CGCAATCGCC AGGAGCAGCT GATGATCTTG
GTTGAAACGG TCGATTCTGT ACCGATGACA GACGATCCCT TCTTGGATAT TTTGGTAAAC
CTCAATTGGT CTAGAGGAAG TCTGAAAAAG ACTTTTACGC TGTTGCTCGG AGATGTGCAA
AGGGTGACGG TGAAGCCGGG TCAGACATTG TCTGAAATAA CAGCCATCAT GGCCCCTCAA
TTGGATGGCG CTACTCTTGA TCAAACAATG ATGGCTTTGT ATAAAGCCAA TCCAGATGCC
TTTGCCAGTG GCAGTATTAA TCGCTTGGCA GCTGGCGCTG AGTTGTCTAA ACCTAGTCAA
GCATTGTTGC GATCCATTAG TCCTGCGGAG GCAAATCAAT TCGTAGCTGA TGCCAATGAG
CAATGGCGTT CTGAGCATGG TGACAAAGAT GCCGGCACTG GCAATGCAAA GTCGGCCAAT
GCTAGGGCCC GGGAAGACGA TCCTAAAGAT CGCTTAAGAA TTGGTTCAAG TGCCGAAGGA
AATGAACAGG AGCGTCGTTA CACGGAAGAG TTGGTTGCCC AAGAAGAGTT GGTTGCCCAA
GAAAAGATGT TGGAGCAAAC CAAAGCTCGC GTAGCTGAAT TAGAAAAAAA TATTGCTGAT
TTACAAATAC TCTTGGATAA ATCTAAAGAG AAGAAGGCGG TAGACGGTAA TTTTGGTTTA
GGTGGATTTG GCCCAGCTAT TTTGGCTATT TGCTTAATCA CATTAACAGG CTTAATCTTG
TGGGGTTTAG CCTGCAATGC ACGCCGCTCT GAAGTAACAA GTTTTCATAC TTCAGCTCAT
CACGCAGTGA ACGAGACAAA GTATGAAGAA GAGAGGCCTG TAGCCGGATC GCATTTTGAA
ATGCCCGCAC GTGCCAAAGC CTTATTTGAA GGAATTGATC TCGATCTTTC AAAGCCCGCA
AAAGATGTGC CAGTAGCGGC TGTTACTCCG GTATCCAACC CACTGGTAGA TACCTTGCGC
GTCAAGTTGA ATCTAGCCCG TGCCTACATC ACGATTGGGG ATTTTCCCGC CGCTAAAAAG
TCATTGGAGG AGGTGTTGCG AATCAGCAAT TCGATTGATC CTGCAATTAC TATTGAAGCT
CAAGGCTTAT TGGCTGAAAT CTCGCATCGC AATACCTAA
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| Protein sequence | MLRISQLGLL RLFCLVLLSW SSLASAITLG APQLQSRPGE PLRVEIPIRV GADEQGALSS
LNVAMPNKAA YERLGISQKI LPLNPQAMVY RNRQEQLMIL VETVDSVPMT DDPFLDILVN
LNWSRGSLKK TFTLLLGDVQ RVTVKPGQTL SEITAIMAPQ LDGATLDQTM MALYKANPDA
FASGSINRLA AGAELSKPSQ ALLRSISPAE ANQFVADANE QWRSEHGDKD AGTGNAKSAN
ARAREDDPKD RLRIGSSAEG NEQERRYTEE LVAQEELVAQ EKMLEQTKAR VAELEKNIAD
LQILLDKSKE KKAVDGNFGL GGFGPAILAI CLITLTGLIL WGLACNARRS EVTSFHTSAH
HAVNETKYEE ERPVAGSHFE MPARAKALFE GIDLDLSKPA KDVPVAAVTP VSNPLVDTLR
VKLNLARAYI TIGDFPAAKK SLEEVLRISN SIDPAITIEA QGLLAEISHR NT
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