| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1013 |
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| Symbol | |
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| ID | 6184104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 884453 |
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| End bp | 885103 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641671631 |
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| Product | 3-oxoacid CoA-transferase, B subunit |
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| Protein accession | YP_001797808 |
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| Protein GI | 171463695 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
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| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.300705 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 68 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTTGGA ATAGAGATGA AATGGCAGCA CGTGCTGCAA AAGAATTGAA GGATGGTTAC
TACGTGAACT TAGGCATTGG GATGCCCACA TTGGTAGCTA ATCACGTGCC AAAAGATATG
GAAGTATGGC TACAGTCTGA AAATGGCTTA TTAGGTATTG GCCCATTCCC TACCGAAGAA
ACCATCGACG CCGACTTAAT CAATGCGGGC AAGCAAACGA TTACCACCTT GCCTGGATCA
TCTATTTTTT CCTCCGCAGA TTCTTTTGGA ATGATTCGTG GCGGCAAAAT TAATATCGCA
ATTTTGGGTG CAATGCAGGT CAGCGAGCGT GGCGATTTGG CTAACTGGAT GATTCCAGGG
AAAATGGTTA AAGGCATGGG CGGTGCAATG GACTTGGTAG CTGGCGTAAA GCATGTGGTT
GTTTTGATGG AGCATGTTGC CAAGAAAAAA GATGGCACTG AAGAGCTCAA AATTCTGCCA
AAGTGCACAT TACCTTTAAC GGGTGTGGGT GTCATTAGCC AAATCATCAC CGATCTTTGT
GTTCTCGACA TCACTCCTCA GGGCCTGAAG TTAACTGAAC TAGCCCCTGG CGTAACTAAA
GAAGAGGTTA TTGCTAAGAC GGGAGCCCCT GTTGACACAA CGGGTTTCTA A
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| Protein sequence | MPWNRDEMAA RAAKELKDGY YVNLGIGMPT LVANHVPKDM EVWLQSENGL LGIGPFPTEE
TIDADLINAG KQTITTLPGS SIFSSADSFG MIRGGKINIA ILGAMQVSER GDLANWMIPG
KMVKGMGGAM DLVAGVKHVV VLMEHVAKKK DGTEELKILP KCTLPLTGVG VISQIITDLC
VLDITPQGLK LTELAPGVTK EEVIAKTGAP VDTTGF
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