| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0989 |
|---|
| Symbol | |
|---|
| ID | 6182986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 857822 |
|---|
| End bp | 859054 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671608 |
|---|
| Product | Cupin 4 family protein |
|---|
| Protein accession | YP_001797787 |
|---|
| Protein GI | 171463674 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2850] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0764478 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 76 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCAT TTTACTTGAG CAAACCCTAT CAGCCACCCC AAGCCCCTGC CAATCTCCCT
TTAGGCGAGC CCTGGGCCTT ATTTGGAGGA ATTACCCCAA AACAGTTCAT GTCACGGTAT
TGGCATAAGA AGCCCCTGCT GATTCGCGGG GCAATTCCTG CGTATGCCCT TTCCACCAAA
AATGGCGAGC TGCTGGATAG CCCAATACCG GCAAAAGAGC TGCTGAGATT TGCACTGCAA
GATGAAGTGG AATTGCGTCT AGTTGGATCG AAACCATGGA GCTTTGAACA TGGGCCATTT
TCCAAGCAAG AAATTCCAAA TATAGAAAAA CCAAACTGGA CTCTGCTATT TCAGGGCATG
GAAGCACATC ACCCTGCTGC TGCAAAAATA CTCTCTTGGT TTCGCTTTAT TCCAGATGCT
CGACTAGATG ACTTGATGAT TAGCATTGCT GGCGTCGGAG GTGGCGTTGG ACCGCACTTT
GATTCCTATG ATGTCTTCCT CATACAAATG TCAGGCAGAA GACAGTGGCG CATCTCTGAA
CAACAGGATC TAAGTCTAAA TCCAAAACTT CCACTCAAGA TTCTGAAAAA CTTTAAAGCC
GAGCAAGAGT GGACTTTAGA GCCTGGTGAC ATGCTGTACT TGCCGCCGCA AGTAGCTCAT
GATGGCATTT CCCTTGATGC AGGCTGTCAA ACTTGGTCGG TTGGATTTCG GTCTCCCAGT
TTTAAAGAGC TACTGCAAGA AGGTTTGTGG CGACTGGCCG AATCCCTCGA AGATATTCCA
GCCCTGGAAC AGAAATTTGC AGATCCCAAG CAAGGGGCAA CCCATATTGC CGAACAATTA
CCAAGCGAGC TGATTAAGCA ATTACGCTCA AAACTCAAAG AGTTGAAATT GGATCAAATT
GAAGGATTTT TACCAGGCAT CACAGCCTAT CTTTCAGAAC CCAAACAACA GGCCCTGTTT
CATGCGCCAA AAAGCCCCCT AAGCCCACGG GAATTCTCAA AGAAACTATC TAGCGGTAAA
CTTGCTCCCA ACCCTCAAAC GCGAATCCTA AGTCTTAATA AGCAGGTTTA TTGCAATGGT
GACAATATGA GTCGGGGGCA AAATCCAGCA ACTTTGGCTG CCTGGCGCCA TTTATCTGCC
GCAAAAGAGC TAAACAAGGT CAAGCTCCAA AATCTCGATA ACTCCAGTCT TTATGAGGCC
TATTTGGCAG GGTGGCTGAT TTTTGAGCGA TAA
|
|---|
| Protein sequence | MTSFYLSKPY QPPQAPANLP LGEPWALFGG ITPKQFMSRY WHKKPLLIRG AIPAYALSTK
NGELLDSPIP AKELLRFALQ DEVELRLVGS KPWSFEHGPF SKQEIPNIEK PNWTLLFQGM
EAHHPAAAKI LSWFRFIPDA RLDDLMISIA GVGGGVGPHF DSYDVFLIQM SGRRQWRISE
QQDLSLNPKL PLKILKNFKA EQEWTLEPGD MLYLPPQVAH DGISLDAGCQ TWSVGFRSPS
FKELLQEGLW RLAESLEDIP ALEQKFADPK QGATHIAEQL PSELIKQLRS KLKELKLDQI
EGFLPGITAY LSEPKQQALF HAPKSPLSPR EFSKKLSSGK LAPNPQTRIL SLNKQVYCNG
DNMSRGQNPA TLAAWRHLSA AKELNKVKLQ NLDNSSLYEA YLAGWLIFER
|
|---|
| |