Gene Pnec_0960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0960 
Symbol 
ID6183040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp834382 
End bp835113 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content42% 
IMG OID641671582 
Producthypothetical protein 
Protein accessionYP_001797762 
Protein GI171463649 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.395999 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAG CAAAGATTAG TGCCTTAGTT TTGGCAATAG CTGGTGTATT TACAACGAGC 
GCTAATGCAC AATCGGCAAA AGCAAATGCG TGGGAAGGCT TTTATGGGCA AGTCGGCGTT 
GGTTATGGAA TGTTTAACCC AAGCGTATCC AATGGAACAG CATCAATTCC TGCTGGCGTA 
GTCGCGCCCT CTGCGGTTGC TGCGACGACC ACTGCTACTA ATATAAACAA CATTAGTACC 
GGCCTTGTAA ATTTAGCTGC TGGGTATAAT TTTGCAATTA ACTCAAACTA TGTGTTGGGT 
CTAGGGGTTG CTTATTATCC TGGTGCTAGT TCTTCGGCAA CGTCTACTAT GAACATTGTT 
GCCCCCAGTG GCACAACTTT TGACTCTGGA CAAGCTCGCT ACAATGTGAA AAATTTGTAT 
AGCGTAACTT TAAATCCTGG GTATGTGATA GATAATGATC GCTTGGTATA TGCAAAAGTT 
GGATATACTG GCGCAACTAT TGGTTTGTCA ACTGCATCTG TTCCATATAC GATCACTAAC 
TTAACTGGAT ATACTTTAGG GCTTGGATAT AAGCAAATGG TCACTGCATC AATTTACGCT 
TTTGGTGAAG TTAACTACGC TTTTTATGGA AATAAAACAG CTTCATCCAC AGCCTATGGA 
GTTATTCCTG TTACAACCAC AATTAAAGGT ACTGGAACGG ACTTCTTGGT TGGCGCTGGT 
TACCGCTTCT AA
 
Protein sequence
MKTAKISALV LAIAGVFTTS ANAQSAKANA WEGFYGQVGV GYGMFNPSVS NGTASIPAGV 
VAPSAVAATT TATNINNIST GLVNLAAGYN FAINSNYVLG LGVAYYPGAS SSATSTMNIV 
APSGTTFDSG QARYNVKNLY SVTLNPGYVI DNDRLVYAKV GYTGATIGLS TASVPYTITN 
LTGYTLGLGY KQMVTASIYA FGEVNYAFYG NKTASSTAYG VIPVTTTIKG TGTDFLVGAG 
YRF