| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0940 |
|---|
| Symbol | |
|---|
| ID | 6184156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 814773 |
|---|
| End bp | 817148 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671568 |
|---|
| Product | DNA topoisomerase IV subunit A |
|---|
| Protein accession | YP_001797750 |
|---|
| Protein GI | 171463637 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTGG TTGAAGTAAG TGAAACTCCG ACCTTAGCAG CGTCATCAGG CGGCGGATCG
GGCAACCATG ATCCCAAACC AATTGACCTC AATGAGGATG GTAAAGATAG CTTAACGCTC
GCGGTATATG CTGAGCGCGC TTATTTAGAT TACGCCATCA GCGTTGTGAA AGGTCGCGCT
CTCCCTGATG TTTCTGACGG CCAAAAACCT GTTCAGCGCC GTATTTTGTT CTCCATGAGC
GAAATGGGTT TGCGTGCAGA TGCAAAGCCG GTAAAGAGCG CTCGTGTAGT TGGTGATGTG
CTGGGTAAAT TTCATCCGCA TGGCGACCAA TCTGCTTACG ATGCTTTAGT TCGCTTGGCG
CAAAGTTTTT CACTGCGCTA TCCATTGATC GATGGCCAAG GTAACTTCGG CTCACGCGAT
GGCGATGGTG CGGCGGCGAT GCGATATACC GAGGCGCGCC TTACCAAAAT CGCTGGCTTA
CTTTTAAGTG AGATAGACGA GGGCACAGTA GATTTCGCGC CAAACTACGA TGGTTCATTC
CAGGAGCCCA AGCTTCTGCC AGCGCGTTTG CCATTTGTAT TGCTTAACGG TGCTTCAGGT
ATTGCCGTGG GTATGGCTAC TGAGATTCCA TCGCACAACT TGCGTGAAGT AGCTTTGGCA
GCAGTGGCGT TGATGAAGTC TCCAAAAATG AGTACTTCAG AGTTGCTCGA GATTATGCCG
GGTCCTGATT ACCCAGGCGG CGGACAAATT ATTTCTTCTG CCGCAGAAAT TGCGCAGATT
TACGAAACAG GGCGTGGCAG CATAAAAGTG CGTGCTCGTT GGTCAATCGA AGAATTGGCC
CGTGGCCAAT GGCAAATTGT TGTTAATGAG TTGCCGCCAG CGACTTCTTC TCAGCGGGTG
TTGCAAGAGA TTGAAGAGAT TACCAATCCG AAGGTTAAGG TTGGCAAAAA GACTCTCACG
CTTGAGCAAA ACAACCTTAA ATCGACCATT CTGAATGTGC TCGACGGTGT GCGCGATGAA
TCTAGTAAGG ATGCTGCTGT GCGTCTGGTA TTTGAGCCTA AAAGCAAGAA TATTGACGTC
AATGAGTTTG TAAATCTTTT GCTTGCCCAT ACTTCATTGG AGTCCAATGC GCCAATGAAC
TTAGTGATGA TCGGTAACGA TGATCGTCCA CGTCAAAAAG GCTTAAAAGA AATCCTCTCT
GAGTGGATCG TGTTTAGGGT TACTACAGTT ACGCGCAGAA CCCAGCACCG CTTAGATAAA
GTTAAAAACC GTATGCATAT TTTGGAAGGG CGTTTAACCG TTCTTCTCAA TATCGACAAG
GTTATTAAGA TCATTCGCAA TAGCGATGAG CCAAAAGCGG ATTTAATTAA AGAATTCAAG
TTGAGCGATC GTCAAGCCGA AGATATTTTA GATATTCGTT TGCGTCAGTT GGCTCGCCTG
GAAGGCATCA AAATTGAGCA AGAGCTTAAA GAGCTTAAAA CTGAACGTGA TGACCTAGAG
GGTTTATTGC AAAGCGATAC CGCCTTGCGC AAGCGTATCA TCAAAGAAAT CGAATCCGAT
ATGAAGGATT TTGGCGATGA TCGTCGCACA TTAATTCAGG AAGATAAGCG TGCTGTTGCT
GAGACCAAAG TGATTGATGA GCCGGTAACG GTGATTGTTT CGCAAAAAGG TTGGGTGCGA
GTACGTCAAG GTCATGAGCA TGATCCAACA CAATTTAGCT TTAAAGCGGG TGATGCTTTG
TACGCTACCT TTGAGGTAAG AACGGTCGAC GTTATTCAAG GATTTGGAAG CGATGGTCGT
GTTTACACCG TTCCTGTTAG TGAATTGCCT GGCGCTCGTG GCGACGGGTC ACCTCTGACT
AGTTTTGTAA ACTTAGCCTC AGGCTCACAA ATGGTTGCTT ATTATGCTGG CCAGTCTGAT
GATTTGGTAT TGCTATCCAC TAAAGCGGGA TTTGGATTTT TGGCTAATGT TGCTGATATG
ACCACCCGTA ACAAGGCGGG CAAATCTTTC TTGAGTATGG ATGCGAAGGT GCCTGGAGAT
GCGCCTTTGG GAGCAGCAAA AGTCAGAGTG GGTATGAAGC AAGTAGCATG CTTATCTGAA
GCCTCTAAAT TATTAGTCTT CCCATTAGAT GAGCTCAAAC GGTTGCCAAC TGGTGGCAAA
GGCGTCATCC TCATGGGCCT AGATGACAAT GAATTCTTGG CATCAGCAAT CGCCGTTGGT
CCAGATGGAG CTACTTATTC AGGCGCAGGA CGAGCTGGCA AACCAACTGA ACTAGGCTTA
GACGCAAAAA CTTTGAAGTC GTTTGCGGGT AATCGTGCAC GTAAAGGTCA CTTTGTGGAA
CCTCGTCTAA AAGACGGTAA GTTAACAGCA AACTAA
|
|---|
| Protein sequence | MDVVEVSETP TLAASSGGGS GNHDPKPIDL NEDGKDSLTL AVYAERAYLD YAISVVKGRA
LPDVSDGQKP VQRRILFSMS EMGLRADAKP VKSARVVGDV LGKFHPHGDQ SAYDALVRLA
QSFSLRYPLI DGQGNFGSRD GDGAAAMRYT EARLTKIAGL LLSEIDEGTV DFAPNYDGSF
QEPKLLPARL PFVLLNGASG IAVGMATEIP SHNLREVALA AVALMKSPKM STSELLEIMP
GPDYPGGGQI ISSAAEIAQI YETGRGSIKV RARWSIEELA RGQWQIVVNE LPPATSSQRV
LQEIEEITNP KVKVGKKTLT LEQNNLKSTI LNVLDGVRDE SSKDAAVRLV FEPKSKNIDV
NEFVNLLLAH TSLESNAPMN LVMIGNDDRP RQKGLKEILS EWIVFRVTTV TRRTQHRLDK
VKNRMHILEG RLTVLLNIDK VIKIIRNSDE PKADLIKEFK LSDRQAEDIL DIRLRQLARL
EGIKIEQELK ELKTERDDLE GLLQSDTALR KRIIKEIESD MKDFGDDRRT LIQEDKRAVA
ETKVIDEPVT VIVSQKGWVR VRQGHEHDPT QFSFKAGDAL YATFEVRTVD VIQGFGSDGR
VYTVPVSELP GARGDGSPLT SFVNLASGSQ MVAYYAGQSD DLVLLSTKAG FGFLANVADM
TTRNKAGKSF LSMDAKVPGD APLGAAKVRV GMKQVACLSE ASKLLVFPLD ELKRLPTGGK
GVILMGLDDN EFLASAIAVG PDGATYSGAG RAGKPTELGL DAKTLKSFAG NRARKGHFVE
PRLKDGKLTA N
|
|---|
| |