| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0922 |
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| Symbol | |
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| ID | 6184492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 798251 |
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| End bp | 799138 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641671552 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_001797734 |
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| Protein GI | 171463621 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4105] DNA uptake lipoprotein |
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| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.357756 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 80 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACG CAACATCAGA CGCCAGTTTA AGGCTTGCTG GGAATTCTTT CACACAAAAA
AAGACCCTCA ATACCCACAG CATGCCGATC GCCCTGCTTT TGGCTTTGCT TTTTGCATTA
ATGCTCTTAG ATGGCTGCGC CGGTAGCGAT GGCAATAAAG ATGATACTGA CATCTGGTCA
GAGGCAAAAC TTTATTCAGA GGCAACAGAC AAATTAAATG ATGCTGACTT TGCAAAGTGC
GGCAAGTACT TTGAAAAATT GGAAGCTCGT TTTCCATTTG GACCTTACTC ACAACAAGCG
CAAATTAATG CCGCTTATTG CTATTGGAAA GCGCAAGAAC AAACACAAGC GCTTGTTGCC
ATTGATCGCT TCATTAAATT ACATCAAGGC AGCCCGAACT TAGATTACGC TTATTACTTA
AAAGGACTCA TTACCTTTAA TGATGACCTA GGGTGGCTCG GTAAATTTAC TGGCCAAGAT
TTAAGTGAGC GTGATCCTAA GGCAGCTAAA GAAGCCTTTG AATCATTTAA GGTTGTTGTT
GAGCGCTTTC CTAATAGCAA ATACACACCA GACGCAATAG ACCGCATGCG TTATATCGTC
AACTCTCTTG CAGAGGCTGA TGTGATCGTA GCTCGCTTCT ATTATCAGCG CGGCGCTTAT
TTAGCCGCAG CTAATCGCGC TCAATTAGTT ATTCGTGATT ATGACCGCGC ACCAGCTGTC
GAAGAGGCTC TTTACATACT CACTAAGTCT TACGAAAAGC TTGGCATGAC TCAATTGAGC
AAAGATTCCG CACGTGTATT TAAATTGAAC TTCCCAGATA GCGACATGCT GGAAACTGGA
CAGCGCGTTA AAAAAGAACG TAGATGGTGG CAGTTCTGGA ATAAATAA
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| Protein sequence | MSDATSDASL RLAGNSFTQK KTLNTHSMPI ALLLALLFAL MLLDGCAGSD GNKDDTDIWS
EAKLYSEATD KLNDADFAKC GKYFEKLEAR FPFGPYSQQA QINAAYCYWK AQEQTQALVA
IDRFIKLHQG SPNLDYAYYL KGLITFNDDL GWLGKFTGQD LSERDPKAAK EAFESFKVVV
ERFPNSKYTP DAIDRMRYIV NSLAEADVIV ARFYYQRGAY LAAANRAQLV IRDYDRAPAV
EEALYILTKS YEKLGMTQLS KDSARVFKLN FPDSDMLETG QRVKKERRWW QFWNK
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