Gene Pnec_0872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0872 
Symbol 
ID6184520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand+ 
Start bp747572 
End bp748729 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content45% 
IMG OID641671498 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_001797685 
Protein GI171463572 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.69388 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.678306 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCCTT TGCTTCGCTG GGCCTTCGGA TCCTTTTTCT TTTTATATTT TGCGTACGTA 
GGTCTTGTAT CGCCATACGC AAGCCTCTTC TTTCTGGAAA GAGGTTTTAG CGTGATAGAA 
ATTGCGGCGT TGATGTCTAT GCTGCAGATC ACCAGAATTG TTGGGCCTTT CTCTTGGGGA 
TGGTTATCAG ACTATCTTTC AAACCGCATC GGCATTATTA GATTCTGTGC CTGTCTAGCT 
GCGCTAGTTT TTTTATGCAT CTTTTTTCTA CATGCATACA TCGGATTTTT TATTTGGATG 
TTTGTACTTC ACGCTATCCT GAGCAGTTTG ATGCCTTTAG GTGAATCCGC CACCATTCAT 
GCCTTATATA AAGATAATTC ATTTGACAAG CGTTATGGCC GTTTGCGTCT GTGGGGCTCC 
GTCGGTTTTA TTGCCATGGT CCTTGTTGCT GGCGAATTGT TTCAGCGCAA AACCATCGAA 
CTATATCCAA GTGTAGGTAC AGTAGTTTTA TTTGCATTAG CCTTAGTGAC CTTTTGTCTA 
CATGAACCCA AAATGCAGCA TCGCAAGATG GTCAAAGGCG AGCTACTGGT AGTGCTGTTT 
AATCCGGACG TACGTTGGTT CCTAGCATCT GGATTCTTTA TGATTTTTGC CCATGCTTCT 
TTATATGTTT TCTACTCCCT TTATCTTGCA GATCTGGGGT ACGATAAATT TGAAATAGGA 
CTTTTCTGGG CTCTCGGGGT AATGGCGGAA GTGCTTTTTT TCTATTTCCA GAGCAAGGTT 
CTAAGTAGAC TCGATGCTGA AGTGATATTG CAAGCTGCAT TTGGAATAGG GGTGATTCGT 
TTTGTTTTGA TTGCCTTCTT CCCAATAACC TCGGTATTAA TCGTGGCTCA GTTAATGCAT 
GCAGGAACGT TTGCGGCGCA CCACAGCGCT GCAACAAAAT TACTGCAGCG TTGGTTTACA 
GGCCCCGTTC AGGCTAGAGG ACAAGCACTG ATGGCAACCG TTTCCTATGG TTTAGGTGGA 
ACGCTTGGAG GACTAAGTGC TGGCTGGATC TGGGAAGCAT TGCAACCAAG AGATGTGTTT 
GTGATGTCTG CATTTGCATG CGGTCTGGCG GGGATGGCGA TCCAGAAGCT TAGGCCACGT 
CGCTATCCCA CCAGGTAA
 
Protein sequence
MTPLLRWAFG SFFFLYFAYV GLVSPYASLF FLERGFSVIE IAALMSMLQI TRIVGPFSWG 
WLSDYLSNRI GIIRFCACLA ALVFLCIFFL HAYIGFFIWM FVLHAILSSL MPLGESATIH 
ALYKDNSFDK RYGRLRLWGS VGFIAMVLVA GELFQRKTIE LYPSVGTVVL FALALVTFCL 
HEPKMQHRKM VKGELLVVLF NPDVRWFLAS GFFMIFAHAS LYVFYSLYLA DLGYDKFEIG 
LFWALGVMAE VLFFYFQSKV LSRLDAEVIL QAAFGIGVIR FVLIAFFPIT SVLIVAQLMH 
AGTFAAHHSA ATKLLQRWFT GPVQARGQAL MATVSYGLGG TLGGLSAGWI WEALQPRDVF 
VMSAFACGLA GMAIQKLRPR RYPTR