| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0871 |
|---|
| Symbol | |
|---|
| ID | 6184397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 746443 |
|---|
| End bp | 747558 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671497 |
|---|
| Product | chorismate synthase |
|---|
| Protein accession | YP_001797684 |
|---|
| Protein GI | 171463571 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0082] Chorismate synthase |
|---|
| TIGRFAM ID | [TIGR00033] chorismate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.205918 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 0.59922 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGAA ATACTTTAGG CCTTCTCTTT ACTGTTACCA CTTTTGGCGA ATCCCATGGT
CCAGCCATCG GTGCCGTTGC TGATGGTTGC CCACCTGGAA TGCTGCTTAC TGAAGCAGAT
ATTCAGTTGG ATTTGGACCG CCGCAAACCA GGGACCTCAA GGCACGTTAC TCAGCGCAAG
GAAGAGGATA AAGTTGAAAT TCTTTCTGGT GTATTTGAGG GTAAAACAAC GGGAACCCCT
ATTGCATTGT TAATTCGCAA TACTGATCAA CGTAGCCAAG ACTACGGTGA TATCTTGCAA
ACGTTTCGCC CTGGTCATGC TGATTACGCA TACCAATATA AATATGGAAT TCGCGACCCT
CGCGGTGGCG GCAGATCATC AGCGCGCTTA ACTGCGCCCG TAGTAGCTGC TGCCGTAATT
GCAAAAAAAT GGTTGCATGA GAAATATGGT ACCGAGTTCT ATGGCTATAT GAGTCAGTTG
GGAGAGCTTG AGATTCCATT CAAAGATGCT TCTGAGATTG AAAAGAATCC ATTCTTTGCT
GCAAATGCAG AGTTAATCCC TCAGCTAGAA ACCTACATGG ATGAGTTACG CAGGGCGGGG
GACTCTTGTG GTGCGCGTAT TGAAGTTCGT GCCCGTAATG TACCAGCTGG TCTAGGCGAA
CCGTTATTCG ATAAATTGGA TGCTGACATT GCGCATGCCA TGATGGGAAT TAATGCGGTT
AAAGGTGTAG AGATTGGCGC TGGTTTTAGA TCAGTTGTTC AGCGTGGTAG TGAGCATGGT
GATGAGCTTC ATTCCGATGG TTTTGCTAGC AATAATTCTG GCGGCACTCT TGGCGGCATT
AGTAGCGGCC AAGATTTAAG AGTATCAATA GCGATTAAGC CCACCTCTAG CATTATGAGC
CCTAAACAGT CAGTTGATTT GAGCGGAAAG CCTATTATCG TTCAAACTAA AGGTCGTCAT
GATCCTTGCG TTGGTATACG TGCAACGCCT ATTGCAGAAG CAATGTTGGC CTTAGTTCTG
ATGGATCACG TGCTTCGTCA CCGTGCACAG TGCGCAGACG TTTCAACCTC TATCTCGCCG
ATCCCCGCAT CCCAACCAGG GTCATTTCAC GATTGA
|
|---|
| Protein sequence | MSGNTLGLLF TVTTFGESHG PAIGAVADGC PPGMLLTEAD IQLDLDRRKP GTSRHVTQRK
EEDKVEILSG VFEGKTTGTP IALLIRNTDQ RSQDYGDILQ TFRPGHADYA YQYKYGIRDP
RGGGRSSARL TAPVVAAAVI AKKWLHEKYG TEFYGYMSQL GELEIPFKDA SEIEKNPFFA
ANAELIPQLE TYMDELRRAG DSCGARIEVR ARNVPAGLGE PLFDKLDADI AHAMMGINAV
KGVEIGAGFR SVVQRGSEHG DELHSDGFAS NNSGGTLGGI SSGQDLRVSI AIKPTSSIMS
PKQSVDLSGK PIIVQTKGRH DPCVGIRATP IAEAMLALVL MDHVLRHRAQ CADVSTSISP
IPASQPGSFH D
|
|---|
| |