| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0824 |
|---|
| Symbol | |
|---|
| ID | 6184362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 708049 |
|---|
| End bp | 709302 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641671453 |
|---|
| Product | NADH dehydrogenase subunit D |
|---|
| Protein accession | YP_001797642 |
|---|
| Protein GI | 171463529 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAA TCAAGAACTA CACCCTCAAT TTTGGTCCCC AGCATCCTGC TGCACACGGC
GTATTGCGCT TAGTACTCGA GCTTGACGGT GAGGTGATCC AACGCGCTGA TCCACATATT
GGTTTATTGC ATCGCGCCAC TGAAAAGCTA GCTAAAACTC GTACGTGGAT TCAAAACATT
CCTTACATGG ATCGCTTGGA TTATGTTTCG ATGATGTCCA ATGAACATGC CTATGTCATG
GCCATTGAAA AGTTGTTGCA AGTGGATGTT CCTTTGCGCG CTCAGTACAT TCGTGTGATG
TATGATGAGC TAACTCGCTT ATTGAACCAC TTGCTTTGGA TTGGATGTCA CGGTCTTGAC
GTCGGTGCGA TGGCAGTGTT CCTTTATGCC TTCCGTGATC GTGAAGATAT CTTTGATATG
TACGAAGCAG TATCTGGCGC ACGTATGCAT GCTGCTTACT ATCGTCCAGG TGGTGTATAT
CGTGATTTGC CAGATCAAAT GGCTCAGTAC GATAAATCTA AGATTCGTAG CGCTTCCGCT
GTAAAGCGTT TAAATGAGAA CCGTAGCGGT ACATTGCTTG ATTTTATTGA GCAGTTCGCT
AATGGTTTTG ACGCCAATGT TGATGAGTAC TGCAATCTCT TGACAGATAA CCGCATTTGG
AAGCAGCGCC TTGTTAACAT TGGTATTGTG ACGCCTAAAC GTGCTTTGCA GCTTGGCTTC
ACAGGTCCGA TGTTGCGTGG TTCTGGCATC GAATGGGATT TGCGGAAGAA GCAACCGTAT
GAAGTGTATG ACCGTCTCGA CTTTGATATT CCAGTTGGCG TGAACGGCGA TTCTTATGAT
CGTTATTTAG TTCGCATGGA AGAAATGCGC CAATCAAATC ACATCATCAA ACAGTGTGTT
GCTTGGTTAA AAGCAAATCC AGGCCCTGTA ATGAGCACTA ACCATAAGGT TTCTCCACCG
AAGCGCGTGG ATATGAAGAC CAATATGGAG GAATTAATTC ACCATTTCAA ACTCTTTACT
GAAGGTATTC ACGTTCCTGA TGGTGAGGCT TACTCTGCTG TTGAACATCC AAAAGGTGAG
TTTGGTATCT ACTTGATTTC AGACGGCGCT AATAAGCCAT ACCGTATGAA AATTCGTGCG
CCAGGCTTTG TGCATTTATC TTCAATGGAT GAAATGTCAC GTGGCCACAT GTTGGCTGAT
GCGGTAACCA TCATTGGCAC GCAAGATATT GTGTTCGGGG AGATTGACCG CTAA
|
|---|
| Protein sequence | MAQIKNYTLN FGPQHPAAHG VLRLVLELDG EVIQRADPHI GLLHRATEKL AKTRTWIQNI
PYMDRLDYVS MMSNEHAYVM AIEKLLQVDV PLRAQYIRVM YDELTRLLNH LLWIGCHGLD
VGAMAVFLYA FRDREDIFDM YEAVSGARMH AAYYRPGGVY RDLPDQMAQY DKSKIRSASA
VKRLNENRSG TLLDFIEQFA NGFDANVDEY CNLLTDNRIW KQRLVNIGIV TPKRALQLGF
TGPMLRGSGI EWDLRKKQPY EVYDRLDFDI PVGVNGDSYD RYLVRMEEMR QSNHIIKQCV
AWLKANPGPV MSTNHKVSPP KRVDMKTNME ELIHHFKLFT EGIHVPDGEA YSAVEHPKGE
FGIYLISDGA NKPYRMKIRA PGFVHLSSMD EMSRGHMLAD AVTIIGTQDI VFGEIDR
|
|---|
| |