| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0810 |
|---|
| Symbol | |
|---|
| ID | 6184137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 694535 |
|---|
| End bp | 696322 |
|---|
| Gene Length | 1788 bp |
|---|
| Protein Length | 595 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671439 |
|---|
| Product | acetolactate synthase, large subunit, biosynthetic type |
|---|
| Protein accession | YP_001797629 |
|---|
| Protein GI | 171463516 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.845021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACAA GCAGCGCCGA ATTTTTAGCT ACTAAAGCTA ATAAAGACTC AATAAATACA
AATAATGATG CAGCGCCTCC AGAAATGATT GGCGCAGAAA TGCTAGTTCA TGCATTGTAC
AAAGAGGGAG TTGAGTTTGT CTGGGGTTAC CCAGGCGGAT CCGTTCTCTT TATCTATGAC
GAAATTTTTA AGCAAGATAA GTTCGAACAT ATCTTAGTTC GCCATGAGCA AGCAGCCGTT
CATGCAGCTG ATGGCTATGC ACGCGCAACT GGTAAGGTTG GCGTTGCTCT AGTGACATCA
GGTCCTGGCG TAACGAATGC GGTGACCGGT ATCGCAACTG CATACACCGA TTCCATTCCA
GTGGTGATCA TCAGCGGTAA TGTGCCAACC TACGCTATCG GTGAAGATGC TTTCCAAGAG
GCAGATACCG TTGGCATCAC GCGCCCAGTA GTGAAGCACA ATTTTTTAGT TAAAGACGTT
AAAGATCTTC CTTTGGTTCT CAAGAAGGCT TTCCATATTG CACAGACCGG CCGTCCAGGT
CCGGTGCTGA TCGATATTCC CAAGGATGTC TCAGCTGCAA AAGGTCCTTT CGTATATCCA
GAGACCTTGG AAATGCGTTC ATACAACCCT GTAGTAAAGG GGCATGGCGG GCAAATTCGT
AAAGCAGTTG CTTTGCTGCA AGAAGCTGAG CGCCCATATA TTTACACTGG TGGCGGCGTG
ATTTTGTCTG ATGCTGCTCC TGAGTTAAAA GAATTCGCAG ACCTCTTAGG TTATCCCGTT
ACCAATGCTC TGATGGGTTT GGGCGGTTTT CCTGGAACAA GTCCACAGTT TTTGGGCATG
CTCGGTATGC ACGGAACTTA CGAAGCCAAT ATGGCGATGC AGCACAGTGA TGTGTTGATT
GCTATTGGTG CGCGTTTTGA TGATCGCGTG ATCGGAAACA CTGCTCACTT TGCAAGTCAT
CCACGCAAGA TCATTCATAT CGACATTGAT CCTTCCGTTA TTTCTAAGCG TGTGAAGGTG
GACGTTCCTA TCGTTGGCAA TCTCAAAGAA GTTTTAGTTG AGATGATCGC TCAGCTCAAA
GCAGCTGGCC CACGTAAAAA CGGCGATAAA GTTGCTGTTT GGTGGGATCA GATCAATGAG
TGGCGCAAAA AAGATTGCTT GAAATACGAC GAAGCTTCTC AAATTGTGAA GCCACAGTAC
GTAGTTCAAA AATTATGGGA ACTCACCAGT GGGGATGCTT TCATTTGTTC TGATGTAGGT
CAGCATCAAA TGTGGGCTGC ACAGTTCTAC AGGTTTGATA AGCCACGTCG CTGGATTAAC
TCTGGCGGTC TTGGCACTAT GGGTGTTGGC TTGCCTTACG CCATGGGCAT CAAGAAGGCT
TTCCCTGAAA AAGATATTTT CACTATCACT GGTGAAGGCT CTATTCAGAT GTGTATTCAA
GAGCTCTCTA CTTGTAAGCA GTACGACACT CCAGTGAAGA TCGTGTCATT GAACAATCGC
TATCTTGGTA TGGTTCGTCA GTGGCAGGAG TTGACCTACA ACAAGCGTTA TTCCACCTCG
TATATGGATT CTTTGCCTGA CTTTGTGAAG TTGGCAGAAG CCTATGGACA CGTTGGCATG
CGTATTGAGA AAAAATCCGA TGTTGAGGGT GCGCTCAAAG AAGCTATTCG CTTGAAAGAT
CGCACTGTAT TCATGGATTT TCAGACAGAC CCAGAAGAAA ACGTTTGGCC AATGGTTCAA
GCGGGCAAGG GTATTACTGA AATGCTTTTG GGTAGTGAGA ATCTGTAA
|
|---|
| Protein sequence | MNTSSAEFLA TKANKDSINT NNDAAPPEMI GAEMLVHALY KEGVEFVWGY PGGSVLFIYD
EIFKQDKFEH ILVRHEQAAV HAADGYARAT GKVGVALVTS GPGVTNAVTG IATAYTDSIP
VVIISGNVPT YAIGEDAFQE ADTVGITRPV VKHNFLVKDV KDLPLVLKKA FHIAQTGRPG
PVLIDIPKDV SAAKGPFVYP ETLEMRSYNP VVKGHGGQIR KAVALLQEAE RPYIYTGGGV
ILSDAAPELK EFADLLGYPV TNALMGLGGF PGTSPQFLGM LGMHGTYEAN MAMQHSDVLI
AIGARFDDRV IGNTAHFASH PRKIIHIDID PSVISKRVKV DVPIVGNLKE VLVEMIAQLK
AAGPRKNGDK VAVWWDQINE WRKKDCLKYD EASQIVKPQY VVQKLWELTS GDAFICSDVG
QHQMWAAQFY RFDKPRRWIN SGGLGTMGVG LPYAMGIKKA FPEKDIFTIT GEGSIQMCIQ
ELSTCKQYDT PVKIVSLNNR YLGMVRQWQE LTYNKRYSTS YMDSLPDFVK LAEAYGHVGM
RIEKKSDVEG ALKEAIRLKD RTVFMDFQTD PEENVWPMVQ AGKGITEMLL GSENL
|
|---|
| |