| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0756 |
|---|
| Symbol | |
|---|
| ID | 6184503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 653393 |
|---|
| End bp | 655297 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671398 |
|---|
| Product | acetate--CoA ligase |
|---|
| Protein accession | YP_001797591 |
|---|
| Protein GI | 171463478 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR02188] acetate--CoA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCATG GAACCATTAA AAAACTTTGC GATGAAGCGA TTACGGATTA CGACGGTTTT
TGGGGTCGTC TTGCTAAAGA AAATATTTAC TGGAAAAAAT CATTCACTAA AGTTTTGGAT
GAATCCAAAG CGCCTTTCTA CAAATGGTTT GAAGATGGCA TAACGAATGC TTCTTATAAC
TGTTTAGACC GTCAAGTTGA AGCTGGTTTT GGCGACAAGA CTGCCATCAT TTTTGAGGCT
GATGACGGCA CTGTTACTAA GGTAACTTAC AAAGAGATGC TTGAGCGCGT TTGCAAAATG
GCAAATGCAC TGCGTAAGAT GGGTGTGAAG TCTGGTGACA GCGTCATTAT TTATATGGCA
ATGACCATCG AAGGTATTGT TGCGATGCAG GCATGTGCCC GTATTGGTGC AATTCACTCT
GTCGTATTTG GTGGCTTCTC TGCACAAGCT CTACGTGATC GCATTATGGA CGTTGGTGCA
GTTGCAGTGA TTACTGCTGA TGGCCAGTTC CGCGGCGGCA AAGCTTTGCT ACTCAAAGCA
ATTTGTGATG AAGCTCTTTC TACAGGTGAG TGCCCTAAAG TTAAGCATGT CATCGTGAGC
AAGCGCACCG GTACTGATGT ACCTATGCAG GCAGGTCGCG ATATTTGGAC GCAAGAAATC
ATCGCGAATG AAGCAACGAC TTGTGAGCCA GAGTGGGTAA GCGCTGAGCA CCCATTGTTC
ATTCTGTATA CATCCGGTTC GACTGGTAAG CCAAAAGGTG TTCAGCACTC TACTGGTGGA
TACCTCTTGT GGGCCATTCT CACAATGAAG TGGACTTTTG ACATCAAGCC AAACGATGTG
TTCTGGTGTA CCGCTGACAT TGGTTGGGTA ACAGGTCACT CATACATTAC TTATGGCCCG
CTCGCAGTTG GCGCTACTGA AATTGTGTTT GAAGGTGTTC CTACCTATCC AAATGCTGGC
CGTTTCTGGG ACATGATCCA AAAACACAAA GCATCTATTT TCTATACAGC ACCAACAGCA
ATTCGTTCAT TGATCAAAGC ATCAAGCAAT GATCAAGCTG TTCATCCGAA GAGCTACGAT
TTGTCATCAC TGCGTCTCTT GGGTTCTGTA GGCGAGCCAA TTAATCCTGA AGCTTGGATG
TGGTACTACG AGAATGTGGG TGGCTCACGT TGCCCAATCG CCGACACTTT CTGGCAAACA
GAAACTGGCG GTCATATGAT TTCTCCATTG CCAGGTGCAA CTCCAATGAT TCCAGGTTCA
TGCACATTGT CATTGCCAGG TATTCAGGCG GCGATCGTCG ATGAAGCTGG TGTAGATGTT
CCAAATGGCC AAGGCGGTAT TTTGGTTGTG AAACGTCCAT GGCCTTCTAT GATTCGTACG
ATTTGGAATG ATCCTGATCG TTTCGTGAAG TCTTATTTCC CAGAAGAGTT GGGCGGTACT
TTGTATCTGG CAGGTGACGG CGCAATCCGT AATAAAAATA CTGGCTACTT CACTATTACA
GGTCGTATCG ATGACGTCTT GAACGTTTCC GGTCATCGCA TGGGAACTAT GGAAATTGAA
TCTTGCTTAG TTGCAAATCC ATTAGTTGCT GAAGCTGCGG TTGTGGGTCG TCCTGATGAT
CTGACTGGTG AGGCTATCTG CATATTCGTG GTTCTCAAAG GTGGTCGTCC AACAGGTGAA
GAGGCTAAAA AAGTTGCTAC CGAATTGCGC AACTGGGTTG GCAAAGAGAT TGGCCCAATT
GCTAAGCCTA AGGACGTTCG TTTCGGTGAT AACTTGCCTA AGACCCGTTC TGGCAAGATC
ATGCGCCGTC TCTTGCGTGT GATTGCAAAA GGCGAAGAGG TTACTCAAGA CACCTCAACC
CTTGAAAATC CGCATATCTT GGAGCAGCTC AAAGAATCTC TGTAA
|
|---|
| Protein sequence | MKHGTIKKLC DEAITDYDGF WGRLAKENIY WKKSFTKVLD ESKAPFYKWF EDGITNASYN
CLDRQVEAGF GDKTAIIFEA DDGTVTKVTY KEMLERVCKM ANALRKMGVK SGDSVIIYMA
MTIEGIVAMQ ACARIGAIHS VVFGGFSAQA LRDRIMDVGA VAVITADGQF RGGKALLLKA
ICDEALSTGE CPKVKHVIVS KRTGTDVPMQ AGRDIWTQEI IANEATTCEP EWVSAEHPLF
ILYTSGSTGK PKGVQHSTGG YLLWAILTMK WTFDIKPNDV FWCTADIGWV TGHSYITYGP
LAVGATEIVF EGVPTYPNAG RFWDMIQKHK ASIFYTAPTA IRSLIKASSN DQAVHPKSYD
LSSLRLLGSV GEPINPEAWM WYYENVGGSR CPIADTFWQT ETGGHMISPL PGATPMIPGS
CTLSLPGIQA AIVDEAGVDV PNGQGGILVV KRPWPSMIRT IWNDPDRFVK SYFPEELGGT
LYLAGDGAIR NKNTGYFTIT GRIDDVLNVS GHRMGTMEIE SCLVANPLVA EAAVVGRPDD
LTGEAICIFV VLKGGRPTGE EAKKVATELR NWVGKEIGPI AKPKDVRFGD NLPKTRSGKI
MRRLLRVIAK GEEVTQDTST LENPHILEQL KESL
|
|---|
| |