| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0735 |
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| Symbol | |
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| ID | 6184312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 635367 |
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| End bp | 636896 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641671380 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001797575 |
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| Protein GI | 171463462 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTAAGT CATTCATATA CTTAGCGTTA ATGATGCTGT TTTTAGCGGG GTGCGAGTCA
ATGGGTCAGT TGCCTCCGCA ATCCGAGGCT GTAATGCGCC AACAAATGAG TTTAGATCCT
GCGCAAATCA TGGCTGATCT TGCTCCAAAA ACACAACAGA CTTTGGATTT GGGGCCAAAG
ATTGAGCGCA AGCTTACAGA GCAGCTTGAT CAAATCCGTA GAAACTTTAT TAATGAATCT
CAGAGATCTG AAGACGGCCA GTGGAAGTCA TTTAATGTCA ACTTGAACTT TGTTGACGTG
GATATTCGGG AGTTGGCACA AGCGATGACT CAAGTTTCGG GGGTCAATAT CCTGGTTGGC
GATGAGGTAG AGGGTACAGT CACAGTCAAA ATTAATAATG TGCCATGGGA TAAAGCTCTT
GATAATATTC TTCGAATTAA AGGATTATCT AAGAGTGTTG ATCCGGGCTC AAATATTATC
CGCATTCAAA AGCCTGAAAC AGTATTGGCG CGGGATGAGT TTGAAAGAAA ACGCTTGGAG
GAGGTTAGCA GGCAGATTGC TGCAAAACGG ATTGTGAGCA CTCAGGTGAC TGAGATATTC
CGCCTGTATT ACACCAAACC AGCAATTGTG AAGAAGCAAC TTGAGGCAAT TTTTGGGGGA
AATACTGGTG CGGCAGGGGC GCAAGCAACA AGACCACCGG GTGGGATTAT CGAAATTACT
ACTGATGAGC GTATTAACTC CATCATAGTT AAGGGCACTC AAAGCGAGAT GGAGCTAGTG
GCTAAGCTCA TTTCCAAGTT GGATATACGC ACGCAAGAGG TATTGATTGA AGCCTTCATT
GTTGAGGCGG ATGATGATTG GCAGTATGAG TTGGGTTCGC GTTTTGGGTA TCGGAATACC
ACTGGTAATG GAACATCAAC CAATCCAACT AGCGCTGTTG GTGGCGCGGT AGGTGATTTG
GCTAATGCCA ATATCTTTAG TCGTCCAGTC ACTGGAGCTC CTTTTGGTCT TGGTTATCTA
TTTCAGACCA CTGCTTCGCA ATTGAAGGTG GAGTTAACTG CTATGGAGAA ATTAAGTTTA
GTAAAAATCA TCTCCAATCC ACACGTCTTT ACGATGGATA ACGAGGAGGC GGTAGTGATT
GACGGTGTGC AAATTCCTTA CCCGGTTCCT GGAGTGGGCA CCAATCAAAT CACTTATGAG
TTTAAGGATG CAGCTCTAAA GCTGACAGCT ACTCCTAGCA TTGTTGGTGA TGGCAATCTG
TTTTTGAACA TGATTGTGAA TAAAGACTCA CCTAACTACT CCACCTCACC ACCCTCAATT
AACAAGCGTG AAGTGAGAAG TAAATTGCTC ATACAAGATG GAACGATTGC CGTAATAGGT
GGTATTTATG ACCAAACTAA GGAGAACACC GTAGAGAAGG TGCCATTGCT TGGAAGTATT
CCACTCCTAG GGTCTTTGTT TAGCTACACC AGAAAAGCTG ATAAGAAAAC ACAGCTCTTA
GTATTTATTG CGCCAAAGAT ATTGAACTAA
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| Protein sequence | MRKSFIYLAL MMLFLAGCES MGQLPPQSEA VMRQQMSLDP AQIMADLAPK TQQTLDLGPK
IERKLTEQLD QIRRNFINES QRSEDGQWKS FNVNLNFVDV DIRELAQAMT QVSGVNILVG
DEVEGTVTVK INNVPWDKAL DNILRIKGLS KSVDPGSNII RIQKPETVLA RDEFERKRLE
EVSRQIAAKR IVSTQVTEIF RLYYTKPAIV KKQLEAIFGG NTGAAGAQAT RPPGGIIEIT
TDERINSIIV KGTQSEMELV AKLISKLDIR TQEVLIEAFI VEADDDWQYE LGSRFGYRNT
TGNGTSTNPT SAVGGAVGDL ANANIFSRPV TGAPFGLGYL FQTTASQLKV ELTAMEKLSL
VKIISNPHVF TMDNEEAVVI DGVQIPYPVP GVGTNQITYE FKDAALKLTA TPSIVGDGNL
FLNMIVNKDS PNYSTSPPSI NKREVRSKLL IQDGTIAVIG GIYDQTKENT VEKVPLLGSI
PLLGSLFSYT RKADKKTQLL VFIAPKILN
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