| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0727 |
|---|
| Symbol | |
|---|
| ID | 6184329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 628903 |
|---|
| End bp | 629253 |
|---|
| Gene Length | 351 bp |
|---|
| Protein Length | 116 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641671372 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001797567 |
|---|
| Protein GI | 171463454 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4795] Type II secretory pathway, component PulJ |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 0.912557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCATG GTGATAACGG ATATACCCTG GTGGAGTTGC TGGTGGCAAT CGCTGTAACT
GCGATTATTT TAGTTGGCAC ATATGCTGCC TATACCTTCT TTGCACAACA GCAACAAGCT
CTCTTGGCGC AAACCGAGGT TGATTGCGCT GCTCTACGCA CTATTGATTT AATGCAATCA
GATATCAGAA TGGCTGGATT TAAGGATTAT GCTGATCCCA ATCTGATGCC GGCAAGTCAG
GTAATTGTTA TTAGTAGTAC AAATCCTGGT GACATTCACT TTGTATTTGA TGACACGATG
CATCCGGATC TTTATATCGC GCCTTGGTGC GCTATTACCT TACCGATGTA A
|
|---|
| Protein sequence | MNHGDNGYTL VELLVAIAVT AIILVGTYAA YTFFAQQQQA LLAQTEVDCA ALRTIDLMQS
DIRMAGFKDY ADPNLMPASQ VIVISSTNPG DIHFVFDDTM HPDLYIAPWC AITLPM
|
|---|
| |