| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0682 |
|---|
| Symbol | |
|---|
| ID | 6184182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 591419 |
|---|
| End bp | 593803 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671337 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_001797532 |
|---|
| Protein GI | 171463419 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 0.43674 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAAG CAAAGGACTT GGTGCCACGC GAGGCTGATC GTTTAGGAAC AGTTCAGGGG
CATCGAGATG GATTTGGGTT TGTCATTCCC GATGATGGTG GTGAAGATAT CTTTCTATCT
GAAAGAGAGA TGTCTCGCAT CATGCATGGC GATAGAGTTA ATGTAAGAAT TCTAGGAACA
GATCGCTGCG GTCGCCCAGA GGGTCAAATT GTTGAAGTCG TTCTGCACGC TAATAAAGTA
GTGATTGGAC GTCTTCTAAA TGAAAACGGT GTTTTGATTG TTGCCCCAGA AGATAAGCGT
ATTGGCCATG ACATTTTGAT TCCGCCTAAA GTGCAAGGTA ATGCCAAATT AGGGCAAGTA
GTTAGTGTTG AGATTATTGA TTACCCAGAT AGCTATCGCC AGGCTGTTGG TCGCGTGGTA
GAAGTCTTGG GTGAAATTGA TGATCCCGGC ATGGAAATAG AAATCGCTGT GCGCAAGTAT
GGCGTACCGC ATGAGTTTTC TGCCGCCGCT ATGAAAGAGG CTGCGGCTTT GCCGGATGCG
GTTCAGCAAT CCGATCTTGA AGGTCGCGTG GATCTGCGTG ATGTGCCATT AGTTACCATT
GACGGTGCTG ATGCGCGAGA CTTTGATGAT GCGGTCTATT GTGAGCCGGT CATATACGGC
AAAACGAAGG CCTGGCGTTT GATTGTGGCT ATTGCTGACG TATCTCATTA CGTTAAGCCT
GGTCAGCCAT TGGATAATGA GGGTCTATTA CGCGCTACTT CAGTGTATTT TCCAAGACGC
GTAATCCCGA TGCTGCCAGA GAAAATATCT AATGGCCTTT GTTCTTTAAA TCCTGGAGTA
GATCGTCTGT GTATGGTCTG TGACTCTGTG GTTGATAACA ACGGGATCGT GTTAGTACAT
CAGTTTTATC CGGCGGTGAT GCATTCGGCT CAACGCTTTA CTTACGATAC TGTTTGGGAG
GTCCTTTCTA ACAGCAAGGG TCCAGAAGCT ACGCGCTTCG CGCAGTTTTG CCCCTTACTG
ATGAATCTCT ATTCCCTATA CAAGATCCTA TTAGCAGCTC GTGAGAAGCG GGGCGCTATT
GAGTTTGAAA CGACGGAGAC CCAAATCATT AGCAATGAGC TCGGCAAGAT CTTGCGCATT
GAGCCACGTA TCCGTAATGA TGTCCATCGT TTGATTGAAG AGTGCATGTT GACTGCCAAT
GTTTGTGCGG CAGACTTCAT TGATAAAAAC AAGCACCTTA GCTTGTATCG CGTACATGGT
GAGCCGTCAG AAGAGAAGTT AGTAACTTTG CGTCAAGTTC TTAGAGCGTC AGGGCTTTCA
TTGGGCGGCG GTGAAAAACC TAAGCCACGT GACTTTGCCA AGTTGATTCG GGAAATTAAA
GATCGTCCTG ATGCCAATAT GCTGCAATCC GTTGTGCTGC GTGCCATGCA GCAGGCGATG
TATCAGCCGG ATAACGAAGG CCACTTTGGT TTAGCTTATC CAGCTTATTC ACATTTCACA
AGCCCGATTC GTCGCTACCC TGATTTACTA ACGCATCGGG TAATCAAGTC GATTCTCCAG
AAAAAGCCTT ACGTACCAGT ATTGCCGCCT AAGGTGCCAC TCAATCTCAC CTTGCCGCGT
AAAGGTAAGG GTCGTGAGAA TGCAGTCAAT GCCAAGAAAT CCCAAAGTGA TGCAAAAGCA
GGAGTAGCCA AAGGGGTTAA AAAACCTAAA GGCGCAAATG CAGCATTATC AATCTGGGGT
CAATTGGGCG TTCACTGCTC ATCCAATGAG CGTCGTGCGG ATGAGGCCTC TCGAGATGTT
GAAGTTTGGC TCAAGTGCTA TTACATGCGT GATCATTTGG GTCAAGAATA TGCAGGCACA
GTGACTGGTG TAGCAAACTT TGGCTTATTT ATTCAGTTAG AGAATCTCTT TGTTGAAGGT
ATGGTGCATG TCACTGAGCT TGGTGGAGAT TATTTCCAGT ATGACGAAGC GCGCCAAGAG
TTGCGTGGAG AGCGCACTGG TATTCGTTAT CGCTTGGGTG ATCGCTTGCA TGTATTGGTG
AGTCGTGTTG ACTTGGATGC TCGCAAGATT GAATTCAGCC TTGTGAATTC TGTCGGCGCA
GAACCTGGAG GCTCATCCAA TCGACGTCAG TTGTTATTGG CAACCAATAC CGGAAGACCA
AATAAAAAAG CCGCCCCTAA AAAGAGTCGC CCTGATAATA AGATTCCACA AAAACCAAGT
GGCATTAACG TTAATGCGGC TAAATCTGCA GGCACTCTAG GCGCAAACCA ATCTAAGAGC
AAAGCGACTC GTAAAAGCGG CAAGTCAAGC AAGCCTGGCA GAGTTATCGG TAAACCAGCG
GGTAGTAAGC CCCCAGTTCG CAATACAAAA GCGCGTCGTA AATAA
|
|---|
| Protein sequence | MRKAKDLVPR EADRLGTVQG HRDGFGFVIP DDGGEDIFLS EREMSRIMHG DRVNVRILGT
DRCGRPEGQI VEVVLHANKV VIGRLLNENG VLIVAPEDKR IGHDILIPPK VQGNAKLGQV
VSVEIIDYPD SYRQAVGRVV EVLGEIDDPG MEIEIAVRKY GVPHEFSAAA MKEAAALPDA
VQQSDLEGRV DLRDVPLVTI DGADARDFDD AVYCEPVIYG KTKAWRLIVA IADVSHYVKP
GQPLDNEGLL RATSVYFPRR VIPMLPEKIS NGLCSLNPGV DRLCMVCDSV VDNNGIVLVH
QFYPAVMHSA QRFTYDTVWE VLSNSKGPEA TRFAQFCPLL MNLYSLYKIL LAAREKRGAI
EFETTETQII SNELGKILRI EPRIRNDVHR LIEECMLTAN VCAADFIDKN KHLSLYRVHG
EPSEEKLVTL RQVLRASGLS LGGGEKPKPR DFAKLIREIK DRPDANMLQS VVLRAMQQAM
YQPDNEGHFG LAYPAYSHFT SPIRRYPDLL THRVIKSILQ KKPYVPVLPP KVPLNLTLPR
KGKGRENAVN AKKSQSDAKA GVAKGVKKPK GANAALSIWG QLGVHCSSNE RRADEASRDV
EVWLKCYYMR DHLGQEYAGT VTGVANFGLF IQLENLFVEG MVHVTELGGD YFQYDEARQE
LRGERTGIRY RLGDRLHVLV SRVDLDARKI EFSLVNSVGA EPGGSSNRRQ LLLATNTGRP
NKKAAPKKSR PDNKIPQKPS GINVNAAKSA GTLGANQSKS KATRKSGKSS KPGRVIGKPA
GSKPPVRNTK ARRK
|
|---|
| |