| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0664 |
|---|
| Symbol | ispG |
|---|
| ID | 6184434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 576005 |
|---|
| End bp | 577273 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671319 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_001797515 |
|---|
| Protein GI | 171463402 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.266418 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 81 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGA ATAATTCATT ACCACCATTG CCTTTAGGTC CAGCACCTAA GCGCGCAACG
CGTCAAGCAA CCGTTGCTTG GAAATCCAAC ATCATTACTG TTGGTGGCGA CGCTCCAGTT
CGCGTCCAGT CGATGACCAA TACCGATACT GCAGATGCGG TTGGTACGGC AATTCAAGTA
AAAGAATTGG CACGTGCCGG TTCGGAGATG GTACGTATTA CTGTTAATAC GCCAGAAGCA
GCCGCTGCAG TTCCTTATAT TCGTGAACAA CTAGACAAGA TGGATATCTT GGTGCCATTG
ATTGGCGACT TTCATTACAA CGGCCACACT TTGTTGAATG ATTTCCCAGA GTGTGCAAAG
GCACTTTCGA AGTACCGTAT TAATCCAGGT AATGTGGGCA AGGGCGCTAA GCGTGATCCA
CAATTTGCAC AAATGATTGA AGCTGCTTGC AAGTATGACA AGCCAATACG GATTGGTGTG
AACTGGGGCA GTTTAGATCA AGATCTCTTA GCCTCCATTA TGGACAGTAA TGCGGCTTTA
GCAGTTCCAA AAACTGCGCA AGAAGTGATG ATCGAGGCTT TAATTCAATT CGCTTTGCAG
TCTGCAGAAA AAGCGGTTAA GTTGGGTATG AACCCAGATC AAATTTTGCT GTCTTGCAAA
GTAAGTAATG TTCAAGATTT AGTAGCGGTG TATCGTGATC TCTCGCGTCG TTCTGACTAT
CCATTGCATT TGGGTTTAAC TGAGGCTGGC ATGGGTAGCA AAGGCATTGT TTCTTCAACC
GCAGCAATGG GTATTTTGTT GCAAGAGGGT ATTGGCGATA CGATTCGCGT TTCATTGACG
CCTGATCCAG GCGCACCACG TGAAAACGAA GTGATTGTTG CTCAAGAAAT ACTGCAAACT
ATGGGTCTGC GTAATTTCAC TCCAATGGTG ATTGCTTGTC CTGGTTGTGG CAGAACGACC
AGCACCACTT TCCAAGAGTT GGCTGCCAAT ATTCAATCCT ATTTACGTCA GCAAATGCCG
GTTTGGAAGA AAACCCATCC TGGCGTTGAG AATATGAATG TGGCCGTAAT GGGCTGCATC
GTCAATGGCC CAGGCGAGAG TAAGCATGCC AATATTGGTA TTTCATTGCC GGGAACGGGT
GAAACTCCGG CTGCGCCGGT GTTTGTGGAT GGGGTTAAGG TGAAAACACT GCGTGGTGAG
AGAATTGCAG AGGAGTTTCA AGTGATTGTT GACGAATACG TAAAGCAAAA CTACTCAACT
AAGGTTTAA
|
|---|
| Protein sequence | MSLNNSLPPL PLGPAPKRAT RQATVAWKSN IITVGGDAPV RVQSMTNTDT ADAVGTAIQV
KELARAGSEM VRITVNTPEA AAAVPYIREQ LDKMDILVPL IGDFHYNGHT LLNDFPECAK
ALSKYRINPG NVGKGAKRDP QFAQMIEAAC KYDKPIRIGV NWGSLDQDLL ASIMDSNAAL
AVPKTAQEVM IEALIQFALQ SAEKAVKLGM NPDQILLSCK VSNVQDLVAV YRDLSRRSDY
PLHLGLTEAG MGSKGIVSST AAMGILLQEG IGDTIRVSLT PDPGAPRENE VIVAQEILQT
MGLRNFTPMV IACPGCGRTT STTFQELAAN IQSYLRQQMP VWKKTHPGVE NMNVAVMGCI
VNGPGESKHA NIGISLPGTG ETPAAPVFVD GVKVKTLRGE RIAEEFQVIV DEYVKQNYST
KV
|
|---|
| |