| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0660 |
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| Symbol | |
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| ID | 6184508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 571567 |
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| End bp | 572994 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641671315 |
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| Product | RNA methyltransferase, TrmA family |
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| Protein accession | YP_001797511 |
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| Protein GI | 171463398 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.107668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 0.988536 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATAGAG GGGATAAGCC GGTCAATATA GAAGTGGCCG AGCCGATTAC AGTTGAAGTC
TTAGATCTTG ATGCTCAAGG AATTGCTCGT TTAGCGCCTA GCGAAGAAGA GGCTGCCCAA
GATCAAAGCG GTAAAGTCAT CTTCATCAAA GGCGCATTAC CAACGGAGTT GGTTACTTAC
ACTGTTACTA GCGATAAGTC TCGTTTTAGC AAAGCCAAAG TGCGCGAAAT TCTTAAGCCT
GCGGTATTCA GGGCTGAGCC TAAGTGCGCT GCTTTTGGTA TTTGCGGTGG TTGCACCATG
CAACATTTAG ACATACGCGC ACAAGTCGCA ATGAAGCAGC GTGTACTTGA GGATGACCTG
CAACATATTG CCAAAGTAAA GTCTGAGGAA ATTTTGTGTC CGATGGGCGG CCCCACTTGG
GAATATCGTC ACCGTGCCCG TTTAAGCGCA GTCAATCGCT CCATTAAAAA AGGTACGGTA
CTGATTGGCT TTCATGAGGG TAAGAGTGGC TACGTGGCGG ACATGTTGGC TTGCGAAATA
TTGCCTAAAC ATGTTTCCGA TTTATTGCCG GAGATGCGTA AGCTAGTCAT GGGCTTATCC
ATTGTCGATC GGATGCCGCA AATAGAGATT GCTATTGGTG AGCCTGAGGA TGCGCAGTCA
GATGATCCTC AAAAATCTAA GCCAGTCACC GCCTTGGTGT TTCGCAACCT TAAACCATTA
ACCACTGAAG ATGAGCAGCT TCTACGTGCA TTCGCTGATC AGCATGAGGT TTGGATATGG
CTTCAGCCCA AAGGGATTGA GACCATAGCA CCGTTTTATC CGCTCACTGG CAAGCTTTGT
TATCGCCTGC CTGAGTTTGA AATCGAGATG CCATTTAAGC CGTGTGATTT CACGCAAGTA
AATCATATGA TGAACCGTGC ATTGGTGAGC AGGGCGATTC GCTTGCTTGA GGTGCAGCCT
ACAGATCGTG TGCTCGATTT ATTTTGCGGT ATTGGTAATT TCACATTACC GCTTGCACGA
AAAGCAAAAC AAGTTTTAGG TATTGAAGGT TTGGAGAGTT TGACTGCCCG AGCTAAATCT
AATGCACAAC ATAATGGACT CTCCGATAAA GCGAGTTTCA TGCAAAGCGA TTTGTTTGAA
GTCACATCAG AGACAGTTGC ATCATGGGGT GGGGCGGAGC GTTGGCTGAT GGATCCTCCG
CGCAAAGGTG CAATGGATAT TTGTAAAGCG CTCGCAGAAT TGCATTTGCA GCAAAGTGAT
TTATTGCCAG AGCGCATTGT GTATGTCTCA TGTAATCCCA AAACCTTGGC AAGAGATGTA
GAAATCCTAT GCCACCAAGC AGGCTACCGT TTGAGTAGTG CAGGGATTAT CAACATGTTT
CCACACACCT CGCACGTCGA GTCTATGGTG GTTTTCGACC GCGCTTAG
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| Protein sequence | MHRGDKPVNI EVAEPITVEV LDLDAQGIAR LAPSEEEAAQ DQSGKVIFIK GALPTELVTY
TVTSDKSRFS KAKVREILKP AVFRAEPKCA AFGICGGCTM QHLDIRAQVA MKQRVLEDDL
QHIAKVKSEE ILCPMGGPTW EYRHRARLSA VNRSIKKGTV LIGFHEGKSG YVADMLACEI
LPKHVSDLLP EMRKLVMGLS IVDRMPQIEI AIGEPEDAQS DDPQKSKPVT ALVFRNLKPL
TTEDEQLLRA FADQHEVWIW LQPKGIETIA PFYPLTGKLC YRLPEFEIEM PFKPCDFTQV
NHMMNRALVS RAIRLLEVQP TDRVLDLFCG IGNFTLPLAR KAKQVLGIEG LESLTARAKS
NAQHNGLSDK ASFMQSDLFE VTSETVASWG GAERWLMDPP RKGAMDICKA LAELHLQQSD
LLPERIVYVS CNPKTLARDV EILCHQAGYR LSSAGIINMF PHTSHVESMV VFDRA
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