Gene Pnec_0647 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0647 
Symbol 
ID6184205 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp561386 
End bp562804 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content45% 
IMG OID641671310 
ProductCarbohydrate-selective porin OprB 
Protein accessionYP_001797506 
Protein GI171463393 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATGACC CGCAAGATTT ATCTACCCCT CCTGTTGAGC ATGATTTGCA CATTTTTCGG 
AGCAACTGCA TTTGCGCAGA AAGCGGGATC AGGCTCGGAT CAAATTGCGA GTTTGCCGCA
CCGATTGATG ATTTGCCAAC TGAGGGAACT CTCTTTAGTT TACCGGTAAA TGTACATGGT
CAAACCACTT ACATCAATCA GCGCTACAAC AATTTTACGT CCAGCTATTC AGGCATGAAT
GGTTTGTCAG CTCAAAAGTC GATGGCCTAC ACATGGTCTG GCACTTTATT TTTTGGAGCG
CGCTTAGCTC CAAATACCGA TGTGTACTTC AACCCGGAAG TGATTTCTGG GGTTCCGTTT
TCAGGTCTCA CTGGTTTGGG TGGCTTTAGT AATGGAGAGG CAAATAAATC TGCTGGCCTT
AATGCCAAGT TTTATTCTGC GCGCGCATTC TTGCGCCAGA CCATTAATCA AGATGGGGAT
AAAGTTCTTC TTGAGAACGA AGCAAATCAA ATTATGCAAA CTGTTAGCAG TAATCGCGTA
GTTATTACTG CCGGACAATT TTCCACTTTA GATATTTTTG ACGATAGTCG TTATGCAAAA
GATCCACGTA TTCAGTTTAT GAACTGGGGC AATATGACCT ATTTGGCCTA TGACTACGCT
GCCGATGCGC GCGGCTACAG TACTGGCTTA GCGGGCGAAT GGTATCTTGA TAACTGGGTG
ATGAGGGCTT CTCGTATGCT CGCTCCAAAG AATCCAAATG GCCGTGATTT GAATTGGCAA
ATGTTTAATG CTTATGGCGA TCAGTTTGAG GTAGAGCGCC AACACCACAT TGCTGACTTG
CCGGGTAAGG TGAGTGTTCT CGCGTATCGC AATAAAATGA TCTTGGCACG TTTTTCTGAT
GCTACAAGTT TCGTTATTGC TAATAATGCG CAAGGCACAC AAGCAATTAA TAATGTTCGC
ACGAATTACC AATATAAAAC CGGTATTGGT ATTAATGGCG AGCAAGCGTT AACTAAAGAT
CTAGGTATCT ATGGTCGCGC TTTTGCCTCT GACGGCCATA CTGAAACAAT GTCTTTTACT
GAAGCGGATA ACTCAGTATC AGTTGGTATG GGCTTAAGTG GCACAAGCTG GAGTCGCCCC
AAAGATACGG TTGGTATCTC CATGATGCAA AACGGCCTAT CGAGTTATCG GAAAAATTAT
TTGCAGTCGG GTGGGGTATC CTACTTCATT GGTGACTACG CAGGTCCGGG TCGGACGATT
TCATATCGCC CAGAGCGTAT CGGGGAGCTG TATTACAACG CCACTGTCAT TAAGAATGTT
CTGGCTGGAT TGAACTATCA GCACATTAAT AACCCAGCCT ATAACGCTGC TCGTGGACCT
GTAAATATTC TTTCTTTTAG GATTCACGCT GAGTTTTAA
 
Protein sequence
MNDPQDLSTP PVEHDLHIFR SNCICAESGI RLGSNCEFAA PIDDLPTEGT LFSLPVNVHG 
QTTYINQRYN NFTSSYSGMN GLSAQKSMAY TWSGTLFFGA RLAPNTDVYF NPEVISGVPF
SGLTGLGGFS NGEANKSAGL NAKFYSARAF LRQTINQDGD KVLLENEANQ IMQTVSSNRV
VITAGQFSTL DIFDDSRYAK DPRIQFMNWG NMTYLAYDYA ADARGYSTGL AGEWYLDNWV
MRASRMLAPK NPNGRDLNWQ MFNAYGDQFE VERQHHIADL PGKVSVLAYR NKMILARFSD
ATSFVIANNA QGTQAINNVR TNYQYKTGIG INGEQALTKD LGIYGRAFAS DGHTETMSFT
EADNSVSVGM GLSGTSWSRP KDTVGISMMQ NGLSSYRKNY LQSGGVSYFI GDYAGPGRTI
SYRPERIGEL YYNATVIKNV LAGLNYQHIN NPAYNAARGP VNILSFRIHA EF