| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0635 |
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| Symbol | |
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| ID | 6183369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 545173 |
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| End bp | 546564 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671298 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001797494 |
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| Protein GI | 171463381 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 70 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGCACT TTAAGTTACC GCGTCTACGC GAGGATATCC CCTCCTTACT AAAACTTGCC
GGACCTTTAT TGATTGGCCA ACTGGCGGTG ATTGCATTTG GCGTTTTAGA CACCGCAATG
ACGGCGCGCT ATTCTGCCGA TGATTTAGCT GCCCTTGCAA TGGCGTCCGC TATTTTCATT
AGCATTTACG GTGGCTTAAC TGGTGTCATT TCTGCTCTTG CGCCAATTGC CGGTCAACTA
TTTGGAGCTA AGCACTTTTC TAAAATCGGT GAAGAGGTTC GACAAGCTGC TTGGCTAGCT
CTGGGGCTGA CCATTTTTGG TTATTTTGTT TTACTCAATG CCGATCGCTT ACTCGCCATT
TCACAAGTCA ATGTGGATAT TGAGGATAAG GCAAAGCTAT ACCTCAACAT CTTGGCAATC
GGCTTGCCGG CCAGCATGGG AATGCGCGTA TTGATGGCAC TACACAATGC AGTGTCACGC
CCTACCGTCA TTACCGTGGT GCAAATTATT GGTCTAGCCC TTAAATTACC GCTCAACCTG
CTTTTTATCT ACGGCGGCTT TGGTATTGAA GGCATGGGTG GTCCTGGTTG TGCTGTTGCC
ACCGTCATCA TCAACTGGTC ATGGTTGCTC ATGACTTTGG GTTTTGTATT GTTTAATCGC
TTTTACAAGC CATTTAAGAT CTTTGCGCGC TTTAGCATGC CAGATTGGCA TCGCATTTGG
ACCTTACTCA AGCTGGGAAC CCCGATTGGC TTTAGCTACT TGATTGAAGT AACTTCGTTT
ACCTTTATGT CCCTCTTTAT CGCCCGCCTT GGGACCACTG CATTAGCGGG CCACCAAATC
GTAGCCAATA TGAGTACCGT GATTTATATG GTGCCACTTT CACTCTCAAT AGCGACCATG
ACCTTGGTAT CTCAAGCGAT TGGCGCCGAT AAACCGGAGC GAGCTGAAGA GATCGGCTGG
TCTTCTGTCT TTTTTACTAC CACGCTGTGC ATCAGCATTG GTATCGCAGT TTGGATCCTA
AGAGTTCAAT TGTTAGATCT TTACGATCCG CCAGCAGAAG TGAAGGCTTT CTCCATTCCC
CTTTTTCTGT TTATTGCGTT CTATCAAGTA TTTGATGTCC TGCAAGTCAC CACGGCATTT
ATTTTGCGCG CGTACCGCAT TGTCTTTTGG CCCATGGTCA TCTATGCGGC TTCACTTTGG
GGCGTCGGCC TAGGCGGTGG CTACCTCATG GGCTTTAATG TGCTGGGCAA TACACCCCAA
TTCCTGCAAG GCGCCAATGG ATTTTGGGCT AGCAACAGCC TTAGCCTAGG ATTAGCCGCG
TGCTTCTTGC TCTATTTATT TAGAAAAACG GCGGAGCGCT ATGAGAAGTT GCATCCGCCG
GTAGAGGTGT AA
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| Protein sequence | MLHFKLPRLR EDIPSLLKLA GPLLIGQLAV IAFGVLDTAM TARYSADDLA ALAMASAIFI
SIYGGLTGVI SALAPIAGQL FGAKHFSKIG EEVRQAAWLA LGLTIFGYFV LLNADRLLAI
SQVNVDIEDK AKLYLNILAI GLPASMGMRV LMALHNAVSR PTVITVVQII GLALKLPLNL
LFIYGGFGIE GMGGPGCAVA TVIINWSWLL MTLGFVLFNR FYKPFKIFAR FSMPDWHRIW
TLLKLGTPIG FSYLIEVTSF TFMSLFIARL GTTALAGHQI VANMSTVIYM VPLSLSIATM
TLVSQAIGAD KPERAEEIGW SSVFFTTTLC ISIGIAVWIL RVQLLDLYDP PAEVKAFSIP
LFLFIAFYQV FDVLQVTTAF ILRAYRIVFW PMVIYAASLW GVGLGGGYLM GFNVLGNTPQ
FLQGANGFWA SNSLSLGLAA CFLLYLFRKT AERYEKLHPP VEV
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