| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0614 |
|---|
| Symbol | |
|---|
| ID | 6183855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 530350 |
|---|
| End bp | 531099 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641671281 |
|---|
| Product | putative sulfate transport system substrate-binding protein |
|---|
| Protein accession | YP_001797477 |
|---|
| Protein GI | 171463364 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2998] ABC-type tungstate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 0.582786 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGGCA GACTATTCCT CACTGCATTA ATAGCCCTAT CTACTCCAAT TAGTCAGTCC
TACGCTCAAG AAAAAAGTAT TGTGGTGTCC TCTACCACCT CCACCGAGCA ATCAGGACTT
TTTAATTACA TGCTGCCCAT CTTTAAGATG AAGACTGGCA TTGAAGTCAA AGTGGTGGCT
GTAGGAACTG GTCAAGCCTT AGACATAGGT CGACGTGGTG ATGCCGATGT CGTGTTTGTG
CATGACAAGC CTGCTGAAGA AAAATTTGTG GAAGAAAGCT ACTCCACCAA ACGCTATGAA
GTGATGTATA ACGACTTTAT TCTGATTGGA CCTAAATCAG ATCCTGCAAA AGCTGGCGGC
GGAAAAGATA TTCAAGCAGC ATTCCAAAAG ATTGCCTCAG CTCAAGCACC CTTCGTATCC
CGTGGCGACA AGAGTGGCAC CCATGCCGCA GAACTTTGCT ATTGGAAAGG TGCAGGTATT
GCAGTCTCCT CAAGCCAGGT TTGGTATAAA GAAACTGGAT CTGGCATGGG CCCCGCTCTG
AACACCGCTT CCGCAATGAA TGGCTACATC CTGGCTGACC GCGGCACATG GCTGAGCTTT
AAGAATCGCG GCGATCTCGT AATTTTGGTT CAGGGAGACC CAAAATTATT TAATCAATAT
GGCGTCATGC TTGTCAACCC TGCTAAATTC CCGCATGTGA AAAAAGTTCA AGGTCAAGAA
TTTATTGACT GGCTCATCTC CAAAGATTAA
|
|---|
| Protein sequence | MIGRLFLTAL IALSTPISQS YAQEKSIVVS STTSTEQSGL FNYMLPIFKM KTGIEVKVVA
VGTGQALDIG RRGDADVVFV HDKPAEEKFV EESYSTKRYE VMYNDFILIG PKSDPAKAGG
GKDIQAAFQK IASAQAPFVS RGDKSGTHAA ELCYWKGAGI AVSSSQVWYK ETGSGMGPAL
NTASAMNGYI LADRGTWLSF KNRGDLVILV QGDPKLFNQY GVMLVNPAKF PHVKKVQGQE
FIDWLISKD
|
|---|
| |