| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0609 |
|---|
| Symbol | |
|---|
| ID | 6182912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 527759 |
|---|
| End bp | 528193 |
|---|
| Gene Length | 435 bp |
|---|
| Protein Length | 144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641671277 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001797473 |
|---|
| Protein GI | 171463360 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0824] Predicted thioesterase |
|---|
| TIGRFAM ID | [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family
[TIGR02799] tol-pal system-associated acyl-CoA thioesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTC AAACTAATTC AAACTCCTCT GCCTTTGCCT ACGTTCATCG AGTTTGCTAT
TCCGATACCG ATGCGGCCGG CTTTGTCTAT CACGGTCGTT ATTTGGAGAT TTTTGAACGC
AGTCGCGCAG AGTGGCTATC TAAAAAAGGA TTGAGTCCAA CTAAGCTTGC GAATGAGTTC
AATATGGTTA TGCCCTTACG CGAACTCACT ATGAACTTCT ATAAGCCAGG ACGCCTTGAT
GACTTACTTT ATATCGATCA AATCATTGAG CACCGCGGCC GCACTCAGGT AACCGTTAAA
CAGACCGCAC AAAGAAAGCT TCCGGACAGC GAAGAATTTC AAATAATTGC TAGCGCTGTA
TTGCATATTG TCTGCATTGA TACCAATACA CTCAAACCTA AAGCATGGCC TGATTGCGTA
TTTCAGGATG AGTAA
|
|---|
| Protein sequence | MTIQTNSNSS AFAYVHRVCY SDTDAAGFVY HGRYLEIFER SRAEWLSKKG LSPTKLANEF
NMVMPLRELT MNFYKPGRLD DLLYIDQIIE HRGRTQVTVK QTAQRKLPDS EEFQIIASAV
LHIVCIDTNT LKPKAWPDCV FQDE
|
|---|
| |