Gene Pnec_0592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0592 
Symbol 
ID6184176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp516413 
End bp517630 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content47% 
IMG OID641671265 
ProductHI0933 family protein 
Protein accessionYP_001797461 
Protein GI171463348 
COG category[R] General function prediction only 
COG ID[COG2081] Predicted flavoproteins 
TIGRFAM ID[TIGR00275] flavoprotein, HI0933 family 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones74 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAAA CCTGGGATGC CATCACTGTC GGTGGCGGGG CTGCAGGCTT ATTTTGCGCT 
GGAGTTGCCG GTCAGCTAGG CAAGAAAGTG CTTGTGCTCG ACCACGCAGA GGTGCTGGGT
GAAAAAATAC GTATCAGTGG CGGTGGTCGC TGTAACTTCA CTAATTTACA CAGTAGCCCA
TCCAACTTTT TATCGCTCAA TCAGCATTTT GTTAAAAGTG CATTGGCGAG ATATCCTTCA
TCTGAATTCA TTAAGCTCGT GACGTCTTAT CGCATTGGTT ACCACGAAAA ACATCAAGGA
CAATTATTTT GCGATGACTC TGCCAAGCAA ATTATTGACA TGCTTTTTTC TGAATGTACT
AAGGGTAGGG TGAGCATTCG TAATCCAGTG AGTATTCGGT CTATCGAACA GGTTAATGAT
TCGTGGATTG TCAATACGGA TGCCGGAGTT GAAAAGTCCA AGGCGGTTGT GATGGCTACA
GGCGGTTTGC CAGTGCCGGC CATTGGCGCA ACGGCCTATT CTTTAGATAT TGCCAAACAG
TTTGGGTTAA ATGTTGTTGA GCCAAGGCCC GTTTTAGTGC CGCTCTCATT TACTGCAGAT
AATTTTGGTG GCCTCAATGA ATTAGCGGGT CTTAGCGTCC CAGTCAGAAT TGCTTCTGGC
TCCAAAGGAC ATCGCTATGG TGCCTGCAGA TTTAATGAGG ACCTATTACT GACTCATAAA
GGGCTATCTG GTCCCGCAGT GCTTCAGGCA AGTAGTTATT GGGAAGAGGG TGAGCCTATC
CATATTGATT GGCTTGGGGC AATAGAGCGT CCCGGCGGCT TTAATTGCGA TGAACTTTTT
AATAATGAAG AGAATCGCTT AAAGTTGACC GAAACGATTT TGGCCTCTGT ACTGCCACAG
CGTCTAGCCA AAGCATTTGC AGATCAAAGA AACTTAACAG GTAGAAAATG GGCTGAAGTT
TCTAAAAAAG ATCGTCAAGC CCTCAAAGAG CTTATTACAA ACTGGTCTGT AAAGCCTGCG
GGCACTCTCG GTTGGAAGAA GGCCGAAGTT ATGTTGGGTG GGGTGGATAC CAAAGAGTTA
GATGTGCAAA CCATGATGTC GCGCAAGCAC CAAGGACTTT TCTTTATTGG CGAATGCGTC
GATGTCACTG GTCACTTAGG TGGGCATAAC TTCCAGTGGG CCTGGGCCAG TGGATTTGCT
TGTGCGCACG CCCTATAA
 
Protein sequence
MSKTWDAITV GGGAAGLFCA GVAGQLGKKV LVLDHAEVLG EKIRISGGGR CNFTNLHSSP 
SNFLSLNQHF VKSALARYPS SEFIKLVTSY RIGYHEKHQG QLFCDDSAKQ IIDMLFSECT
KGRVSIRNPV SIRSIEQVND SWIVNTDAGV EKSKAVVMAT GGLPVPAIGA TAYSLDIAKQ
FGLNVVEPRP VLVPLSFTAD NFGGLNELAG LSVPVRIASG SKGHRYGACR FNEDLLLTHK
GLSGPAVLQA SSYWEEGEPI HIDWLGAIER PGGFNCDELF NNEENRLKLT ETILASVLPQ
RLAKAFADQR NLTGRKWAEV SKKDRQALKE LITNWSVKPA GTLGWKKAEV MLGGVDTKEL
DVQTMMSRKH QGLFFIGECV DVTGHLGGHN FQWAWASGFA CAHAL