| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0513 |
|---|
| Symbol | |
|---|
| ID | 6183833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 462957 |
|---|
| End bp | 464153 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641671194 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_001797390 |
|---|
| Protein GI | 171463277 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.70895 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 0.25258 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTGA AGCAAGTAGC CATTCTGGGC TCCACCGGGT CTATCGGTGT TAATACACTT
GATGTTATTC GAGCCCATCC AGATCGATTT AAGGTAGTCG CGCTCACTGC AGCAAAGCAG
GTAGATTTGC TAGCTCAGCA ATGCGCAGAA TTTAAGCCTG CGATTGCTGT TGTTGCCAAT
GCTGATGGCG CGGCCCGCTT AAGTAAGCTT TTGCTTGAGA AAAAAATCAA TACGCAAGTT
TTATATGGAC CGGAAGCCTT GGTAACTGCC GTTGTCGAAT CTGGCTGTGA CGCCGTGATG
GCTGCAATTG TGGGTGCAGC CGGATTGGTT CCTGCAATGG CTGCTGCCAA AGCCGGCAAA
AGAGTGTTGC TGGCAAATAA AGAAGCCTTG GTAATGTCTG GTGATTTATT TATGCAAGCA
ATGAAAGGGG GTGGTGGCGA GCTATTGCCG ATTGACAGTG AGCACAATGC CATCTTTCAA
TGTCTACCCG ATCAATTTTC TAAAGAACCA AACCCACGTC TTGGGGTCGA AGAACTTTGG
TTAACTGCTT CTGGTGGGCC ATTCAGAAAC GCGCCGCTTG ATCAACTTGC GAGCATTACT
CCTGAACAAG CTTGCGCACA TCCCAATTGG GTGATGGGTA GAAAAATTTC TGTAGATTCG
GCAACGATGA TGAATAAAGG TCTTGAGGTC ATCGAGGCAT TTTGGCTGTT TGGTTTACCT
TTAAAGAAAA TTAAAGTATT GATACATCCG CAAAGTGTTG TGCATTCGAT GGTTCGCTAC
CGTGATGGAT CAGTCCTCGC GCAATTAGGT CAGCCAGATA TGCGTACGCC CATTGCATAT
GGTCTGGCAT GGCCAGAGCG GATTGATGCA GGTGTGGCGC CATTGAGTTT GACGCAGTTA
GCAGCTCTCA GCTTTGCCGA ACCAGAGTTG GAGCACTTTC CTTGTCTCTC TTTAGCTTTT
GCTGCTGCTA AAGCTGGGGG TACTGCGCCA GCGGTGCTCA ATGCTGCCAA TGAAATTGCA
GTAGCCGCTT TCTTGGATGA AGGTCTGCCA TATTTGCAGA TACCAGTTGT AGTAGAGAAG
GTGCTGGGCG TTATTTCTAG AACAAATGCA GATTCGCTGG AGTTGATCTT GGGTGTGGAT
GCGCAGGCTC GACAAGCAGC GCAAGCGGCG GTGAAGGAAG TTCTTTGCAG GCGCTAA
|
|---|
| Protein sequence | MPVKQVAILG STGSIGVNTL DVIRAHPDRF KVVALTAAKQ VDLLAQQCAE FKPAIAVVAN
ADGAARLSKL LLEKKINTQV LYGPEALVTA VVESGCDAVM AAIVGAAGLV PAMAAAKAGK
RVLLANKEAL VMSGDLFMQA MKGGGGELLP IDSEHNAIFQ CLPDQFSKEP NPRLGVEELW
LTASGGPFRN APLDQLASIT PEQACAHPNW VMGRKISVDS ATMMNKGLEV IEAFWLFGLP
LKKIKVLIHP QSVVHSMVRY RDGSVLAQLG QPDMRTPIAY GLAWPERIDA GVAPLSLTQL
AALSFAEPEL EHFPCLSLAF AAAKAGGTAP AVLNAANEIA VAAFLDEGLP YLQIPVVVEK
VLGVISRTNA DSLELILGVD AQARQAAQAA VKEVLCRR
|
|---|
| |