| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0501 |
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| Symbol | |
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| ID | 6183388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 447427 |
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| End bp | 450885 |
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| Gene Length | 3459 bp |
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| Protein Length | 1152 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671183 |
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| Product | chromosome segregation protein SMC |
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| Protein accession | YP_001797379 |
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| Protein GI | 171463266 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG1196] Chromosome segregation ATPases |
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| TIGRFAM ID | [TIGR02168] chromosome segregation protein SMC, common bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 72 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGGCC AATTAATTGG CGTTGTGGGC CCTAATGGTT GCGGAAAGTC GAACATTATT
GACGCTGTCC GCTGGGTTTT GGGCGAGTCT CGCGCTAGTG AATTGCGTGG CGAATCCATG
CAGGACGTTA TTTTTAATGG TTCTGGTTTA CGCAAACCAT CTGGCCGTGC CAGCGTAGAA
CTCATTTTTG ATAACACTGA GGGACGCGCT CAAGGTCAGT GGAGTGCTTT TACAGAATTG
GGTATTAAAC GTGTTCTGAC GCGTGATGGA AATTCAAGTT ATTATGTCAA TAATCAAGTA
GTACGCCGCA AAGATATTCA AGATATTTTC TTGGGTACCG GAATGGGCCC AAGAGGTTAC
GCGATTATCG GTCAAGGAAC AATTAACCGT ATTTTGGAAG CGAAGCCTGA AGAGTTGCGC
GTGTTTTTGG AAGAGGCGGC CGGAGTTTCT AAATACAAAG AGCGTCGTAA AGAAACAGCA
TCACGCTTAG AAAACACCGT AGAAAACCTA ACTCGCGTAG AAGATATCTT GCGTGAACTT
GATCAACAGT TAACTCGTTT AGAGAAACAA GCTACTGTTG CCGAGCGCCA TGCAGAGCTT
TCTACGCAGA TGAAATCTCA GCAACAGTTG CTGTGGTTTG TGCGTCAGAC CGAGGCTGGT
AAGGAGCAGG AGCGTCATGC CAACGGTATT CGTGACACGC AAGTTGGTTT AGAAGAACAG
ACTGCTAAGC TACGTCACAT TGAAGCTGAG CTAGAGACAA TGCGCACACA ACAGTACGCA
TTACAAGATA AAGTTTCTCA AGCGCAAGGC GATTTATATC AAACAAATTC TGATGTGAGT
CAGGTTGAGT CACAGATTCT TTATGTGCAA GAAGCACGTC AACGCTTGCA ACAGCAAACT
CAAGATTTGC AGGCGCAATT ACAACGTTGG ACTGTGCAAG AGACTGATGC AGCACAAGCG
CAACGCACTA CTGAGCATGA GCTTTCATTG GCTGCTGAAA AAAAACAGAC CCTCTTAGCG
GATTTGAATG GCTTGCAAGA GCAAATGCCA AGTCGTGAAG AGGCTTATCA AAATGCAAAT
CGTGAACTCA ATCAGGCGCG AGACTCTCTT GCATCCATTG AGCAACGCTT AGCGAGTTTG
GGTGAGCGTA TCCGCTCTAT GTCGGCCCAG TCCGATGAAT TGAAGGGGTG TGAAACTCGT
CTCGTTGGTG AATTCGATGG TTTGCGTCGT CCGGATGCCG AAGCTTTGCA GATGGCGATT
GATCGCCAGA CAATAGCTGC TCGTAAGGTG GAAGAGGCCA AACATCGCGC TGTCGAAACT
CAACAACGTG TTCCTGCTTC TGATGAAGCG CGCAATGCGG CCCAACAAAA AATTCAGGTA
GCAAATCAGG ATTTAGCTCA GACCGAAGCT AAATTGACTG CTTTGACTGC TTTGCAGGCC
AGCGTTCAAG CGCAAGGCAA GATTGGGCCT TGGCTAGAAA GTAAGGGCCT TAAAGAGAGC
AAGCGTCTTT GGCAAGAGCT TAAGGTAGAG AGTGGTTGGG AAGCGGCTCT CGAGTCAGTA
TTGCGTGAGC GCTTGGCTGC GGTTACCGCA AAGAGTGTGC AAGAAACACT GGCCTTGGCT
AATGATGCGC CTCCAAGTCG TTTGGCAATT TTACTCACCG AAGAAATTAC TCCGGCGCAT
ACCTCTGCTC CTGCTGACTT CACCCCATTA TTAAGCCGCG TTCAAAGTGC TGGTGCACCA
AGACTCACTT CAGTTTTGCA AGAGTGGTTG GACAATATCT ATATCGCTAG CAGTCTCGAG
GATGCATTAC ATCGTCGTGA AAAATTGCCT GCTGGTGGTG CATTTGTTAC TCAACAAGGT
CATTTGGTTA GTCGTGTTGG GGTGCAGCTT TACGCAGCAG ACTCTGAGCA AGCCGGTATG
TTGGCACGTG CTCAAGAGAT GGAAAGTCTA GAGAAGCAAT TGCGCGCACA GCAACTGATG
CAAAGCGAGC TTAAGGGCGA GCTGGATCAA TGTGTAGCGA AGTACCAAGC AGCTCATCAG
GCGGCTGAAC AAGCACGTGA AAATGCAGAG CATGCCGTTC AAGAGGCTCA TGGTTTTGAA
GTAGAAAGAA TGCAGTTGAC CCAAGCTGAA GAGCAATACA GTCAACGTGC TGCCCAAATT
CAGGGTGAGT TAAGCGAGTT GCGTCAACAA ATGGAGCAAT TGGCCCAAAC TCAAGAACAG
TCTGCTACTG AGTTGCTTGA ATCCGAAGAA TCTAAACGGG GCTTACAAGA AGCCTTACAA
GTGGCACAAG AAAAGTTAGA GCGTTCTACT GAAGAGCGTG ATCGTTTGCG CGAGTCACTG
CGTGCTGCTG AGATGGCTGC GCAAGAAGCT GCTTTTGCTA CTCGTTCTTT ACAGCAACGT
ATTGCAGACT TACAACGTGA TCAAAGTACT GCGCGTACTC AGATCATGGA GATCCAGAAT
AAACATGACT CAGCCACTCA AGAGCTGGAA ACTTTGAGTG ATGAAGAGGC GCAAGATAAA
TTGCAAGGAT TATTATTGGC TCGCAGTGCG CGTGAGGCTG CTTTAGCAAA CGCTCGTACT
GAGCAAGATG CCTTATTGCA TCAATTGCGC GAAGCCGATG AGTCTCGCAT GCAAGTTGAG
CGCGGTTTGC AGCCGATGCG CGATAAGGTG GTTGATTTGC AATTGCGTGA ACAAGCTGCT
CGTTTGAACT TTGAGCAATT TGCTACCTTA TTATCTGATG CTGAGGCTGA CTTAACAGCG
CTTGAAGCAA GTTTCAGTCC TGACTTAAAG GTTGGCGCAT TACAAAGCGA AGTAAATCGC
TTGAATACCG AGATTCAAGC TTTGGGCCCA GTCAATATGG CTGCCTTGGA TGAATTGTCT
AGTTCACGTG AGCGTAAGCA GTTCTTGGAT GCTCAATCTG CCGACTTAAA TGAAGCAATG
CAGACTTTGA CCGATGCGAT CGCCAGGATT GATGCTGAAA CACGCGATCT CTTGCAGGGT
ACCTTCGACC AGGTGAATGC CCACCTTGGC AAACTTTTCC CCGAGCTGTT TGGTGGTGGT
CATGCTGAAT TGGTGATGAC TGGCGAAGAG ATTTTAGATT CTGGTGTCCA GGTGATGGCT
CAGCCACCGG GCAAGAAAAA CAGCTCTATT TATCTCCTCT CAGGCGGTGA GAAAGCTTTG
ACTGCGATTG CTTTGGTGTT CTCGCTCTTC CTCTTGAACC TGACCCCATT CTGTTTGCTA
GATGAGGTTG ATGCGCCATT GGATGATGCA AATACCTTGC GCTATGCACA GCTAGTTGCC
AAAATGTCAG ATAAGACACA GTTTTTATTT ATCTCACATA ACAAGATCAC TATGGAAATT
GCTCATCAAT TGATTGGTGT CACAATGCAA GAGCAGGGCG TCTCCCGTAT TGTTGCGGTG
GATATCTCCT CTGCGGTATC AATGGTAGAG ACTGCCTAA
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| Protein sequence | MPGQLIGVVG PNGCGKSNII DAVRWVLGES RASELRGESM QDVIFNGSGL RKPSGRASVE
LIFDNTEGRA QGQWSAFTEL GIKRVLTRDG NSSYYVNNQV VRRKDIQDIF LGTGMGPRGY
AIIGQGTINR ILEAKPEELR VFLEEAAGVS KYKERRKETA SRLENTVENL TRVEDILREL
DQQLTRLEKQ ATVAERHAEL STQMKSQQQL LWFVRQTEAG KEQERHANGI RDTQVGLEEQ
TAKLRHIEAE LETMRTQQYA LQDKVSQAQG DLYQTNSDVS QVESQILYVQ EARQRLQQQT
QDLQAQLQRW TVQETDAAQA QRTTEHELSL AAEKKQTLLA DLNGLQEQMP SREEAYQNAN
RELNQARDSL ASIEQRLASL GERIRSMSAQ SDELKGCETR LVGEFDGLRR PDAEALQMAI
DRQTIAARKV EEAKHRAVET QQRVPASDEA RNAAQQKIQV ANQDLAQTEA KLTALTALQA
SVQAQGKIGP WLESKGLKES KRLWQELKVE SGWEAALESV LRERLAAVTA KSVQETLALA
NDAPPSRLAI LLTEEITPAH TSAPADFTPL LSRVQSAGAP RLTSVLQEWL DNIYIASSLE
DALHRREKLP AGGAFVTQQG HLVSRVGVQL YAADSEQAGM LARAQEMESL EKQLRAQQLM
QSELKGELDQ CVAKYQAAHQ AAEQARENAE HAVQEAHGFE VERMQLTQAE EQYSQRAAQI
QGELSELRQQ MEQLAQTQEQ SATELLESEE SKRGLQEALQ VAQEKLERST EERDRLRESL
RAAEMAAQEA AFATRSLQQR IADLQRDQST ARTQIMEIQN KHDSATQELE TLSDEEAQDK
LQGLLLARSA REAALANART EQDALLHQLR EADESRMQVE RGLQPMRDKV VDLQLREQAA
RLNFEQFATL LSDAEADLTA LEASFSPDLK VGALQSEVNR LNTEIQALGP VNMAALDELS
SSRERKQFLD AQSADLNEAM QTLTDAIARI DAETRDLLQG TFDQVNAHLG KLFPELFGGG
HAELVMTGEE ILDSGVQVMA QPPGKKNSSI YLLSGGEKAL TAIALVFSLF LLNLTPFCLL
DEVDAPLDDA NTLRYAQLVA KMSDKTQFLF ISHNKITMEI AHQLIGVTMQ EQGVSRIVAV
DISSAVSMVE TA
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