| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0499 |
|---|
| Symbol | |
|---|
| ID | 6184555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 445200 |
|---|
| End bp | 446351 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641671181 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_001797377 |
|---|
| Protein GI | 171463264 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 82 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCA CACTTAAGCT TACCGAAGCT CTCATCGCCT GCCATTCCGT AACACCGGCT
GATGGTGGCT GCCAAGATTT AATTGCCAAG CGTCTACAAG CAATCGGCTT TCATGCTGAA
AGTGTTGTTA GTGGCCCTGA AAATTTTCAG GTAACGAATT TGTGGGCAAT CAAAAAAGGT
AAAGCTGGCG ATCAAGGCAA AGTTTTAATG TTTGCCGGCC ATACCGACGT AGTTCCTACT
GGCCCACTGG AGAAGTGGAC CAGCGATCCT TTCACACCTA CGATTCGCGA TGGCATGCTC
TATGGCCGTG GCGCAGCGGA TATGAAAACT TCACTCGCTA GTTTTGTAGT GGCTACAGAA
GAATTTGTCA CAACCCACCC AGACCACCAA GGCTCTATTG CCTTCTTAAT TACCAGCGAT
GAAGAAGGTC CAGCCAACGA TGGCACTGTC ATCATGTGCG AGCGCCTGCA AAAGCATGGT
CAACGCTTGG ACTACTGCGT GATCGGTGAA CCCACCTCAG TAAATACACT TGGTGATATG
ATTAAAAACG GTCGTCGCGG CTCCCTATCA GGTAAGCTCA GAGTAAAGGG GATTCAAGCA
CATATTGCCT ACCCTCACTT GGGCCAAAAT CCTATTCACC TTTCTGCTCC AGCTATTTCT
GCATTGGTAG AAACTCAGTG GGATAAAGGT AATGAGTACT TTCAGCCAAC CAGTTTTCAG
ATTTCAAATG TACATGCCGG CACTGGCGCC AATAATGTCA TCCCCGGCAA ACTCGTGGTC
GACTTTAATT TCCGCTTCTC AACTGAGAGT AAACCAGAGC AATTACGTGA ACGTCTTGAA
AAGATTCTGA AAGATGCAGG TCTTGAATTT GAGATTGACT GGGTATTAGG TGGCAGTCCT
TTTATTACCG GTGATGGCGA CTTGGCTGGC GCCCTGCGCA AAGCCATCAA AGCAGAAACC
AAAATCGATA CAGAACTCTC CACAACTGGC GGCACGAGCG ATGGTCGCTT TATTGCCAAG
ATCTGCAAAG AAGTTGTGGA GTTTGGCCCT CTGAATGCCA CAAGCCACAA GATCGACGAA
TGCGTTATCG TTGATGATGT AGTGCCACTC AAAAATATCT ATCGCAAGAC TCTCGAACAG
TTAATCGCTT AA
|
|---|
| Protein sequence | MSATLKLTEA LIACHSVTPA DGGCQDLIAK RLQAIGFHAE SVVSGPENFQ VTNLWAIKKG
KAGDQGKVLM FAGHTDVVPT GPLEKWTSDP FTPTIRDGML YGRGAADMKT SLASFVVATE
EFVTTHPDHQ GSIAFLITSD EEGPANDGTV IMCERLQKHG QRLDYCVIGE PTSVNTLGDM
IKNGRRGSLS GKLRVKGIQA HIAYPHLGQN PIHLSAPAIS ALVETQWDKG NEYFQPTSFQ
ISNVHAGTGA NNVIPGKLVV DFNFRFSTES KPEQLRERLE KILKDAGLEF EIDWVLGGSP
FITGDGDLAG ALRKAIKAET KIDTELSTTG GTSDGRFIAK ICKEVVEFGP LNATSHKIDE
CVIVDDVVPL KNIYRKTLEQ LIA
|
|---|
| |