Gene Pnec_0473 details

Gene Information

• Locus tag: Pnec_0473
• Symbol: hscA
• ID: 6183772
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. necessarius STIR1
• Kingdom: Bacteria
• Replicon accession: NC_010531
• Strand: +
• Start bp: 420616
• End bp: 422481
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 641671157
• Product: chaperone protein HscA
• Protein accession: YP_001797354
• Protein GI: 171463241
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR01991] Fe-S protein assembly chaperone HscA

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.307279
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 78
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCTTAT TACAAATCTC TGAACCCGGT AAATCGCTAG CGCCTCATCA GCGTCGCATT 
GCCGTAGGCA TTGATTTGGG AACTACCAAT TCTTTGGTGG CGATTGTGCG TGATGCCTTG 
CCAAAGGTGC TGCCGGATGC TCAAGGTCGT GAGTTACTGC CCTCCGTAAT TCGTTATTTA 
CCCAATGGTA GAACTCAAGC CGGCTTTGAA GCGCTTGAGA GTGTGGTGAT TGATCCGAAA 
AACACGATTG TTTCTGTGAA ACGCTTCATG GGCCGTGGGT TGTTGGATGT CGAGCACATT 
GAAAGCGCTC CCTATGATTT TGTTGATCAG CCTGGAATGC TCAAGTTGAG AACAGTGGCT 
GGTGATAAAA GTCCAATCGA AGTTTCGGCT GAAATCTTGG CGCGCTTACG TCAACTTGCG 
GAAGACTCTG TTTCCGATGA AATCGTTGGT GCTGTGATTA CAGTTCCAGC TTACTTTGAT 
GATGCGCAGC GTCAAGCGAC AAAAGATGCG GCAAAGTTAG CAGGTATCGA AGTTCTCCGC 
CTATTGAATG AACCAACTGC CGCTGCAATT ACTTATGGTT TGGATAATGC TTCTGAAGGT 
GTTTATGCCG TCTATGACTT GGGTGGCGGC ACTTTTGATA TCTCAATATT GCGTATGAGT 
AGAGGTGTAT TTGAGGTGCT TGCCACTGGC GGTGACTCAG CCTTAGGTGG CGATGACTTT 
GATCATCGTT TGTATTGCTG GGTAATTGAA CAAGCCAAAC TACCGCCGCT ATCGATTCAT 
GATCATCGGA CTCTCCTACA GGCTTGCAAG CATGCTAAAG AGCAGCTTAG TCACAATCCT 
CTAGCACGTG TACATGAGAC CCTTGCCGAT GGAACAGTAG TTAATGTAGG CATTAGCCAG 
GCGCAATTTT TTGAGATTAC CCAGAATCTC GTTACCAAGA CTTTGATGAC TTGTAAAAAA 
GCACTACGTG ATGCCGGCCT CAAGGCTGAA GATGTTAAAG GTGTGGTGAT GGTGGGGGGA 
TCAACCCGTA TGCCCAATGT TCAGCGAGCT GTAGCTGAAC TTTTTGGTAC TCAACCATTG 
AATAATTTAA ATCCTGACCA AGTGGTTGCG CTCGGCGCTG CAATGCAAGC TGATTTGCTG 
GCGGGCAATC AAAGTAAGGA TGATGAGTGG CTCTTGTTGG ATGTTATTCC ACTGTCTCTC 
GGTATTGAAA CTATGGGTGG TTTAGTGGAA AAAAGTATTC CCCGTAATAC TCCAATACCA 
GTCGCTAGAG CACAGGATTT CACAACCTTT AAGGATGGTC AGACTGCATT GGCTATTCAG 
GTGGTGCAGG GTGAACGTGA GTTGGCGCAG GATTGTCGCT CGCTAGGCAG GTTTGAGTTA 
CGTGGTATTC CAGCTATGGC AGCGGGAGCA GCGCGTATTC GAGTGACTTT TCAAGTGGAT 
GCTGACGGAT TTCTGTCCGT AAGCGCAACT GAGCAGGGTT CGGGGGTAAA AGCGTCGATT 
GATATCAAGC CTTCTTATGG TTTAACGGAT GCGGAGATTA CTCGCATGCT GCAAGACGGT 
TTTGCATCCG CCAAAGAAGA TCTGCTCTCT AGATCCTTGC GTGAAGAGCA GGTCAATGCA 
CAGCGCTTGC TAGATGCAGT ACAAACAGCA CTAGATAGTG ATCGCAGTCT TCTCAATGCA 
GAAGAGCAGG CGGCTATTGA TCGGGAAATG ACTACATTGC AAAAGATTTT GAATGAAGAG 
ACAAACAGTG CAGTAGTGCG TAAAGCGGTG GATCAGGCAG TTAAAGCTAC AGATGATTTT 
GCGCAAAAAC GCATGAACGC AAGTATTCAG AAGGCTTTAT CCGGCAAGAA TGTTACTGAG 
ATCTAA 

 

Protein sequence

MALLQISEPG KSLAPHQRRI AVGIDLGTTN SLVAIVRDAL PKVLPDAQGR ELLPSVIRYL 
PNGRTQAGFE ALESVVIDPK NTIVSVKRFM GRGLLDVEHI ESAPYDFVDQ PGMLKLRTVA 
GDKSPIEVSA EILARLRQLA EDSVSDEIVG AVITVPAYFD DAQRQATKDA AKLAGIEVLR 
LLNEPTAAAI TYGLDNASEG VYAVYDLGGG TFDISILRMS RGVFEVLATG GDSALGGDDF 
DHRLYCWVIE QAKLPPLSIH DHRTLLQACK HAKEQLSHNP LARVHETLAD GTVVNVGISQ 
AQFFEITQNL VTKTLMTCKK ALRDAGLKAE DVKGVVMVGG STRMPNVQRA VAELFGTQPL 
NNLNPDQVVA LGAAMQADLL AGNQSKDDEW LLLDVIPLSL GIETMGGLVE KSIPRNTPIP 
VARAQDFTTF KDGQTALAIQ VVQGERELAQ DCRSLGRFEL RGIPAMAAGA ARIRVTFQVD 
ADGFLSVSAT EQGSGVKASI DIKPSYGLTD AEITRMLQDG FASAKEDLLS RSLREEQVNA 
QRLLDAVQTA LDSDRSLLNA EEQAAIDREM TTLQKILNEE TNSAVVRKAV DQAVKATDDF 
AQKRMNASIQ KALSGKNVTE I