Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0467 |
Symbol | |
ID | 6184242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 415171 |
End bp | 417327 |
Gene Length | 2157 bp |
Protein Length | 718 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641671151 |
Product | excinuclease ABC subunit B |
Protein accession | YP_001797348 |
Protein GI | 171463235 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00244529 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 76 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGCCG AAATGCCCTC TAAGTTGCCC AAAATTGGTC CAAATTCTGA AGTAAAAGTG GATAAGAAAA GCCCGGCAGC AGATCCTTTG GGCGAAGCTG GCCACGACTT GGATCCAGCC AAGTTTATTA CCTTCCCGGA CTCCCTTTAT CAGCTTTACC AGCCGTTTGC CCCTGCTGGG GACCAGCCCC AGGCTATTGA TGCCTTGGTG GAGGGTATTG AGGATGGATT GACCTTTCAG ACGCTTTTAG GGGTTACTGG GTCGGGAAAG ACCTTCACGA TGGCCAATGT GATCGCCAGA ACCGGTCGTC CAGCCATCAT TTTTGCCCCT AATAAGACCT TGGCAGCCCA ACTTTATAGC GAATTTAGGG AGTTTTTCCC CAAAAATGCT GTTGAGTACT TCGTTAGCTA CTACGACTAT TATCAGCCAG AGGCCTACGT TCCTCAGCGC GACCTGTTTA TTGAGAAAGA TTCCTCGATT AATGAACACA TCGAGCAGAT GCGCTTATCG GCAACCAAGA GTCTTTTAGA GCGTCGCGAT GTGGTTATTG TTGCCACCGT TTCTGCAATT TACGGCATTG GTAATCCTGG CGACTATCAC AGTATGGTGA TGACATTGCG TCCTGGTGAC AAGATGAGCC AGCGTGATAT TTTGATGCGT CTCATAGCAA TGCAATATGA CCGCAATGAA ACGGATTTCA AACGTGGCGT GTTTAGAGTG CGCGGTGACA CGATTGATAT TTTCCCTGCT GAGCATAACG AGCTAGCGGT GCGAGTTGAA TTGTTTGATG ATGTTATAGA GAGTTTGCAA TTCTTTGATC CGCTCACTGG AAAAATTCGT CAGAAGATCC CGCAGTTTAC AGTTTACCCA AGTTCACATT ACGTAACGCC ACGCGATACG GTTTTGAAAG CAATTGAAAC CATCAAAACA GAGTTGCGTA CTCGCTTAGA TGAGTTTGTT AAAGATGGCA AGTTGGTCGA AGCACAGCGT CTTGAGCAAC GCACCCGTTT TGATCTAGAG ATGCTTAATG AATTAGGTTT CTGCAAAGGC ATTGAAAACT ACTCGCGACA CCTATCTGGT GCCGCTCCTG GAGAGGCTCC GCCTACGTTA GTGGACTATC TCCCTAATGA TGCTGTGATG TTTCTCGATG AGAGTCACGT CTTAATTGGA CAGCTCAATG CGATGTATAA TGGTGATAAA TCACGTAAAC ATACTTTGGT AGAGTTTGGT TTCCGCTTGC CTTCAGCGAT GGACAATCGT CCGCTGAAAT TTGCGGAGTT TGAAACCAAG ATGCGTCAAA CTATTTTTGT TTCTGCAACA CCAGCGGATT ATGAGGGCAC ACATCAAGGC CAGGTCGTAG AACAAGTTGC TAGACCAACT GGATTGGTCG ATCCAGAAAT TGAAGTTTTG CCAGCAAGTA CACAAGTGGA TGATTTGTTA GATCAAATTC ATGCGCGTGT CAAAGTGGGT GAACGCGTAT TGGTGACTGT GTTAACCAAA CGGATGGCCG AGCAATTAAC TGACTATCTT TCCGATAACG GGGTGAAAGT GCGCTACGTG CACTCTGATA TTGATACTGT TGAACGCGTA GAAATTTTGC GCGACTTGCG TTTGGGTGTC TTCGATGTTT TAGTCGGGAT CAACTTATTG CGTGAAGGTC TAGATATTCC CGAGGTTTCA CTAGTCGCCA TTCTGGATGC TGATAAAGAG GGTTTCTTGC GTTCTGAGCG CAGCCTGATT CAGACCATTG GTCGTGCGGC GCGAAATGTT CGCGGTAAGG CCATTTTGTA TGCCGATCGA ATCACGGACT CCATGAAACG CGCCATGGGG GAGACTGAAA GACGCCGCAC CAAGCAAATT GCTTTCAATA AGTTGCATGG TATTGAGCCT AAAGGGGTTC AAAAGCGAAT TAAAGACATT ATTGATGGTG TTTACGACGT CAAAGAGAAG CGTCAGGAGA TGCAGATAGA GCAGGAGCGG GCTCGCTATG AGGATATGGG CGAGAAAGAC TTGGTGGCTG AAATTAAGCG CCTAGAGAAG CAAATGAACG CTGAAGCCAA GAATCTGGAG TTTGAGAAGG CTGCCGGCAC ACGAGATAGG CTTACCAAGG TTAAAGAAAT GGCGTTTGGG GCCAGGTCCA GAGATTCAAT CGGCTAA
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Protein sequence | MIAEMPSKLP KIGPNSEVKV DKKSPAADPL GEAGHDLDPA KFITFPDSLY QLYQPFAPAG DQPQAIDALV EGIEDGLTFQ TLLGVTGSGK TFTMANVIAR TGRPAIIFAP NKTLAAQLYS EFREFFPKNA VEYFVSYYDY YQPEAYVPQR DLFIEKDSSI NEHIEQMRLS ATKSLLERRD VVIVATVSAI YGIGNPGDYH SMVMTLRPGD KMSQRDILMR LIAMQYDRNE TDFKRGVFRV RGDTIDIFPA EHNELAVRVE LFDDVIESLQ FFDPLTGKIR QKIPQFTVYP SSHYVTPRDT VLKAIETIKT ELRTRLDEFV KDGKLVEAQR LEQRTRFDLE MLNELGFCKG IENYSRHLSG AAPGEAPPTL VDYLPNDAVM FLDESHVLIG QLNAMYNGDK SRKHTLVEFG FRLPSAMDNR PLKFAEFETK MRQTIFVSAT PADYEGTHQG QVVEQVARPT GLVDPEIEVL PASTQVDDLL DQIHARVKVG ERVLVTVLTK RMAEQLTDYL SDNGVKVRYV HSDIDTVERV EILRDLRLGV FDVLVGINLL REGLDIPEVS LVAILDADKE GFLRSERSLI QTIGRAARNV RGKAILYADR ITDSMKRAMG ETERRRTKQI AFNKLHGIEP KGVQKRIKDI IDGVYDVKEK RQEMQIEQER ARYEDMGEKD LVAEIKRLEK QMNAEAKNLE FEKAAGTRDR LTKVKEMAFG ARSRDSIG
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