| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0437 |
|---|
| Symbol | |
|---|
| ID | 6183606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 388774 |
|---|
| End bp | 389820 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641671127 |
|---|
| Product | NAD-dependent epimerase/dehydratase family protein |
|---|
| Protein accession | YP_001797324 |
|---|
| Protein GI | 171463211 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 0.355798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG TACTCATTCT TGGTGTTAAC GGCTTTATCG GTCACCATCT TTCCAAGCGC
ATTCTTGAGA CAACCGACTG GGATGTCTAT GGCATGGATA TGCAAAACGA TCGTCTTGGT
GACTTAATTA ATCATCCGCG TATGCACTTC TTTGAAGGTG ACATCACCAT CAATAAAGAA
TGGGTTGAGT ATCACATCCG CAAATGTGAC GTCATCTTGC CTTTGGTTGC GATTGCTACG
CCAGCAACTT ATGTTCAGCA GCCCCTCAAA GTATTTGAAC TTGACTTCGA AGCCAATCTT
CCGATCGTGC GCTCTGCAGT GAAATACAAA AAGCATTTGG TATTTCCATC TACTTCCGAA
GTATATGGAA TGTGTGAAGA CAGCGAATTT GATCCAGCTA AATCGAATAT GATTTATGGT
CCGATCAACA AGCCACGTTG GATCTACGCT TGCTCCAAAC AATTAATGGA TCGCGTGATT
TGGGGTTACG GCATGGAAGG CTTACGCTTT ACCCTCTTCC GCCCATTTAA CTGGATTGGC
CCTGGCTTAG ACAGCATCTA CACACCAAAA GAAGGCTCTT CCCGCGTAGT GACTCAGTTC
TTGGGCCATA TTGTTCGCGG CGAATCTATC AACGTCGTTG ATGGTGGTGC ACAGAAGCGC
GCATTTACCT ATGTTGATGA TGGTATCGAC GCCCTAATGC GCATCATCGA TAACAAAGAT
GGTGTTGCGA ACAACAAGAT CTACAACATC GGCAATCCAA ATAACAACCA CTCTATTCGC
GAGCTTGCAA ATCAGATGTT AGAAATTGCA CGCAGCATTC CTGAGTACGC AAAGACTGCT
AACGAAGTGA AGATTGTAGA AACCACCTCT GGTGCTTACT ATGGAGAAGG CTATCAAGAC
GTTCAAAATC GCGTTCCAGC GATTGATAAC ACGATGAGCC AACTGGGTTG GAAGCCAACC
ACCACGATGT CCGATGCGCT CAAAAATATT TTTGAAGCTT ATCGTGAGGA TGTAGAAAAA
GCACGCACCT TAGTTGACAA AGAATAA
|
|---|
| Protein sequence | MKKVLILGVN GFIGHHLSKR ILETTDWDVY GMDMQNDRLG DLINHPRMHF FEGDITINKE
WVEYHIRKCD VILPLVAIAT PATYVQQPLK VFELDFEANL PIVRSAVKYK KHLVFPSTSE
VYGMCEDSEF DPAKSNMIYG PINKPRWIYA CSKQLMDRVI WGYGMEGLRF TLFRPFNWIG
PGLDSIYTPK EGSSRVVTQF LGHIVRGESI NVVDGGAQKR AFTYVDDGID ALMRIIDNKD
GVANNKIYNI GNPNNNHSIR ELANQMLEIA RSIPEYAKTA NEVKIVETTS GAYYGEGYQD
VQNRVPAIDN TMSQLGWKPT TTMSDALKNI FEAYREDVEK ARTLVDKE
|
|---|
| |